RNA id: AMCG00016594


Basic Information

Item Value
RNA id AMCG00016594
length 1887
RNA type mRNA
GC content 0.59
exon number 14
gene id AMCG00016594
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25449909 ~ 25483710 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGTGGGTGTATGAGGCTCAACTGAGACTGGCTTCTGTCAATGTGGGAATGTACCTGTATGGGCTAGATGACTCAGAGCCGgGCTCTGCAGACTCATACACCAGCAGGCCCTCGGACTCAGATGTGTCTCTGGAAGAGGACCGTGAGGCTCTGCGCAAGGAGGCTGACAGACAGGCCCTTGCCACCCTCGAAAAAGCCAAGACCAAACCTGTGGCCTTTGCTGTTAGGACAAATGTGGGCTATAACTCCGGCCCCAATGATGATGTGCCCGTCCAAGGAATGGCCATCTCCTTTGAGGCCAAGGACTTCCTCCATATCAAAGAGAAGTACAACAATGACTGGTGGATCGGGCGGCTGGTGAAGGAGGGTTGTGAGGTGGGCTTCATCCCCAGCCCAGTCAAGCTGGAGAACACACGTCTACAGCAGGAGCAGAGGATGAGGCAGAGCCGACTGAGCTctagTAAGTCTGGAGGAAACTCCAGCTCCAGCCTGGGGGATGTTGCCACAGGAACACGCAGACCCACTCCACCTGCCACAGCTCATGTGGAGTTGTCCACAGTGGGTTTTGATGTTGACCCCCTCGACCTGGATGCAGAAGAAGCTCCCGAGCCCCCCGTTGACTCCCGCTCCCCAAAAGCCAGTGTCAGCAGCGTCACCTCTCCCCAGGCTAATGCCAAGCGCATCCCCTTTTTTAAGAAGATGGAGCACGTTCCTCCATATGACGTGGTGCCTTCAATGAGACCCATCATCCTGGTGGGGCCGTCTCTCAAGGGCTATGAGGTGACTGATATGATGCAAAAGGCACTCTTTGATTTCCTCAAACACAGGTTCGATGGCAGAATATCAATCACACGGGTGACGGCTGATATCTCTCTGGCTAAGCGCTCGGTGCTCAACAACCCCAGCAAGCACACCATCATTGAACGCTCCAGCACTCGATCCAGCCTGGCGGAGGTGCAAAGTGAGATTGAGCGGATCTTTGAGCTGGCGCGCACCCTACAGTTGGTTGCCCTGGACGCAGACACCATCAACCACCCCTCTCAGCTGGCAAAGACCTCCCTGGCACCCATCATCGTCTACATCAAGATCGCCTCACCCAAGGTGCTGCAGAGGCTCATCAAGTCCCGAGGGAAATCCCAGGCCAAACACCTCAATGTACAAATGGTGGCAGCGGACAAACTAGCTCAGTGTCCCCCTGAGCTCTTTGATATCATCCTGGATGAGAACCAGCTGGAGGACGCCTGTGAGCACTTGGCTGACTATCTGGAGGCATACTGGAAGGCCACGCACCCTCCCAGCAgcaacccccccaaccccctgcTCAACCGCACCATGGCCACCGCGGCCCTGGCTTCCTCCCCTGCCCCTGTCTCCAACCTGCAGGGCCCGTACTTGGTGCATGGAGAACAGAAGCGGGATGGGCCTCTGTCTGACAGGACTGGGCTTCATGACTACCAGAGTGACCCAGGGGGCAAACAGCACCAACCGCAGATGTACCTGCGCTCGTCGCGGGCCCAGTCGCGGGGTGGGGGGAGCCGGGGGCTGTCACGGCAGGACACCTTCGACTCGGAGACGCAGGGCAGCCGTGATTCGGCCTACACTGAAGCGGGAGACTCCTGCATGGACATCGAAACAGACCCCTACGAGGAGCCCGAGCCATATCGCGGGGGAGCACGGTTGCATCTCAGCCAGCACCAGCACCGCCAGGCCTCCTGGGAAGATGAGGGCGCTGAGCCTGACCAGGAGAACCTCAATCGGGCCACCATGCACGAGAACCGAGCCAAGGCCCGGGAGAGGTACTGCCAGGGCCAGGAAGCCAGTGAACCCGGAGTGGGCCGCAACAAGAACCAGGAAGACTGGGGGCGGGACGTCTACATCCGCTAG

Function

GO: NA

KEGG:

id description
K04863 CACNB2; voltage-dependent calcium channel beta-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17955 lncRNA downstream 35811 25413316 ~ 25414098 (-) False AMCG00016591
TU17952 lncRNA downstream 44808 25404895 ~ 25405101 (-) True G14472
TU17860 lncRNA downstream 327534 25122090 ~ 25122375 (-) True G14400
TU17763 lncRNA downstream 438654 25008156 ~ 25011255 (-) False AMCG00016562
TU17979 lncRNA upstream 33279 25516989 ~ 25520096 (-) True G14487
TU17984 lncRNA upstream 33279 25516989 ~ 25520096 (-) False G14487
TU17998 lncRNA upstream 59336 25543046 ~ 25545725 (-) True G14496
TU18009 lncRNA upstream 121070 25604780 ~ 25609059 (-) True G14507
TU18019 lncRNA upstream 188594 25672304 ~ 25675200 (-) True G14517
AMCG00016596 mRNA downstream 157 25439336 ~ 25449752 (-) True AMCG00016596
AMCG00016595 mRNA downstream 11134 25433834 ~ 25438775 (-) True AMCG00016595
AMCG00016590 mRNA downstream 26250 25421283 ~ 25423659 (-) True AMCG00016590
AMCG00016591 mRNA downstream 29538 25413574 ~ 25420371 (-) True AMCG00016591
AMCG00016592 mRNA downstream 82330 25363398 ~ 25367579 (-) True AMCG00016592
AMCG00016597 mRNA upstream 127853 25611563 ~ 25642333 (-) True AMCG00016597
AMCG00016600 mRNA upstream 192859 25676569 ~ 25703327 (-) True AMCG00016600
AMCG00016599 mRNA upstream 222371 25706081 ~ 25726547 (-) True AMCG00016599
AMCG00016601 mRNA upstream 341036 25824746 ~ 25825846 (-) True AMCG00016601
AMCG00016614 mRNA upstream 621206 26104916 ~ 26117450 (-) True AMCG00016614
TU17858 other downstream 172431 25273664 ~ 25277478 (-) False AMCG00016579
TU17849 other downstream 366210 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 434566 25012364 ~ 25015343 (-) False AMCG00016562
TU17766 other downstream 438131 25011341 ~ 25011778 (-) False AMCG00016562
TU17725 other downstream 567811 24881148 ~ 24882098 (-) True G14305
TU18038 other upstream 269285 25752995 ~ 25754472 (-) True G14534
TU18183 other upstream 597793 26081503 ~ 26083167 (-) True G14637
TU18222 other upstream 672811 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 698034 26181744 ~ 26184778 (-) False G14676
TU18226 other upstream 698034 26181744 ~ 26184778 (-) True G14676

Expression Profile