RNA id: AMCG00016595


Basic Information

Item Value
RNA id AMCG00016595
length 1234
RNA type mRNA
GC content 0.49
exon number 6
gene id AMCG00016595
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25433834 ~ 25438775 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGTCTTCTCTTTGCCAAATTAATGACAGTGTTCGGAGATCGAGAGCACAAGGTTATCATTGTGGGCCTTGATAACGCAGGCAAGACTACTATTCTCTATCAATTTCTGACCAAGGAGGCTGTGCACACCTCCCCCACCATCGGCAGCAATGTGGAGGAGATTGCAGTGAGGAACACGCGCTTCCTGGTGTGGGACATCGGGGGCCAGGAGAGCCTGCGGACCAGCTGGAACTCCTACTACTGCAACACTGAGATTGTGATCCTGGTGGTggacagcacagacagagagcGCCTCACGCTGACCCGGGAGGAGCTGCACAAGATGCTGGCACATGAGGACCTTCAGAATGCGGCTGTGCTCATTCTGGCCAACAAGCAGGACATGAAGAACTCCATGACTGCTGCGGAGATCTCCCGCTGCCTCACGCTGAGCTCCATCACCGGCCACTCCTGGCACATCCAGGCCTGCTGCGCGCTCACTGGAGAGGGCCTGCCAGCCAGTCTGGACTGGATGAGATCCCACGTTCTCGCCAGCTAAACCCTCAACCAGCTCCAACTACAGCCAACAGAAACCTCAATACTTGAACCAGACCTGGGACATCGAACTCGACTGAGCGGAGTGAGAACCGAACTACTTTCAACTTATTGACTGAAGCAATTTGCTCTCGGCCTGAGTTGCACCTGGCTTGTGATGTCCTGGAGTCGTGGTACTTCTCACCTGCAGCCTCACAGTCCTGTTGGCAGGGCTGCGCTCTTGTGTTTTGGGGGTCAGGTGGGGTTTTCGGGAGACGCTGGTGCTCAATACTAATCCTGTAGTCCACAGACCACTGCGTATGCAATAAGCACGGTACATGCAGGCATCTGCCTGTCTGGACAGTGTGAGCTGAGACTGTGTTTTAATACAGTGATTGACCTGGTTGTCCACAGAACACTAACTGCTCAGGATCGTGATATTGTTCAGCTGCTCTTATTGtgtgaacacaaacacacagacctgATGATCAGTGTGCAAATCATGTGAAGCAGCTCTTGTAAATGGACtgtgttgattttattgttattttgtgttttgttttcaataatagGCTTTTACttgaaatgtacaaaataactAAAGCCCTTGACTGATCAAAATTAGCTATAGTGTCTCTTTTCATCATATTTGTGAAAGCATGCTATATACATTtctagtattgtatttttatatggactcatgtatttttatacaaaaa

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07950 ARL5B; ADP-ribosylation factor-like protein 5B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17955 lncRNA downstream 19736 25413316 ~ 25414098 (-) False AMCG00016591
TU17952 lncRNA downstream 28733 25404895 ~ 25405101 (-) True G14472
TU17860 lncRNA downstream 311459 25122090 ~ 25122375 (-) True G14400
TU17763 lncRNA downstream 422579 25008156 ~ 25011255 (-) False AMCG00016562
TU17979 lncRNA upstream 78214 25516989 ~ 25520096 (-) True G14487
TU17984 lncRNA upstream 78214 25516989 ~ 25520096 (-) False G14487
TU17998 lncRNA upstream 104271 25543046 ~ 25545725 (-) True G14496
TU18009 lncRNA upstream 166005 25604780 ~ 25609059 (-) True G14507
TU18019 lncRNA upstream 233529 25672304 ~ 25675200 (-) True G14517
AMCG00016590 mRNA downstream 10175 25421283 ~ 25423659 (-) True AMCG00016590
AMCG00016591 mRNA downstream 13463 25413574 ~ 25420371 (-) True AMCG00016591
AMCG00016592 mRNA downstream 66255 25363398 ~ 25367579 (-) True AMCG00016592
AMCG00016589 mRNA downstream 73152 25357887 ~ 25360682 (-) True AMCG00016589
AMCG00016593 mRNA downstream 76387 25353341 ~ 25357447 (-) True AMCG00016593
AMCG00016596 mRNA upstream 561 25439336 ~ 25449752 (-) True AMCG00016596
AMCG00016594 mRNA upstream 11134 25449909 ~ 25483710 (-) True AMCG00016594
AMCG00016597 mRNA upstream 172788 25611563 ~ 25642333 (-) True AMCG00016597
AMCG00016600 mRNA upstream 237794 25676569 ~ 25703327 (-) True AMCG00016600
AMCG00016599 mRNA upstream 267306 25706081 ~ 25726547 (-) True AMCG00016599
TU17858 other downstream 156356 25273664 ~ 25277478 (-) False AMCG00016579
TU17849 other downstream 350135 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 418491 25012364 ~ 25015343 (-) False AMCG00016562
TU17766 other downstream 422056 25011341 ~ 25011778 (-) False AMCG00016562
TU17725 other downstream 551736 24881148 ~ 24882098 (-) True G14305
TU18038 other upstream 314220 25752995 ~ 25754472 (-) True G14534
TU18183 other upstream 642728 26081503 ~ 26083167 (-) True G14637
TU18222 other upstream 717746 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 742969 26181744 ~ 26184778 (-) False G14676
TU18226 other upstream 742969 26181744 ~ 26184778 (-) True G14676

Expression Profile