RNA id: TU18026



Basic Information


Item Value
RNA id TU18026
length 915
RNA type TUCP
GC content 0.69
exon number 2
gene id AMCG00016598
representative False

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25725253 ~ 25758926 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGAAGAGCAGCAAGGATAGGGAAAAGGGGGCAGCAGGCAAGAGTGGAAAGGAAAAGGCTGTCACCGCGGCCCCAGCCTCCTTCCCCACCGGGTCCAGGAGACTGGCATTCCCAGAGGGGGAAGCGGTGGGCAAGCGAGTCGAAGCCTCCACTGCTGTCCAGGCCCAGTTGGGGACCAGCACCAGCACggcttcctcctcctcctcctctcggAGCAAGGACGGGGGCAGCCGGTCGGGGAAATCCCGCAAGGACAAGCAGCAGAGGCGCGGGGAGCGGGGGGAGTCCCGCAGCTCCTCGCAGAAAGACAGGGGCGAGAAGGGCCATCGCAAGTCCGGCAAGAGCTACAAGGCCAGTCCCAAGGGCAAGCCCTCGTCCCGAGGCAGCCCCAGGAGGAAGCAGGCCGCTGCCCCCCAGTCTCCCAGCCCAAAGCGAGGGGATAATGACAGCCCCTCCGGGGGTGCGTACGGACAAGATGGGGAGGACAACTATCATCACCGGCGGCGACCCCCGCAGCAGAGCCCCAGCCCCTACCGGGAGCCCTCACGCCGCAGCCGCCAGCGCTCAGACAGTCCCTACGGCATGCGCCACCGCTCCTCCAGCTACGAGCGGGACAACAGCCCTTACACCAGCAGGAGGCGCTCCTCTGTCAGCCCCTACGGCAACCGGCGCTCCTCCAGCACGAGTCCCGTCTCCCGgCGCTCTGCTCGTTCCCGGAGCCGCTCCCCGGTggccttctcctcctcttcctcccggCGCTCTTCCTCTCGCTCGCGCAGTAAGAAGCACTTGGCAGGGGCCCACAGCAGCCGGCCCCCCAGCCTCTCCCCCTCCTCATCCCGCTTCCCCCTCAACTCCAGCCTCGGAGCCGAGCTCAGCCGCCGCAAGAAGGAGCGCCAggctgccgccgccgccg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU18012 lncRNA upstream 47499 25672259 ~ 25678349 (+) True G14510
TU18004 lncRNA upstream 114159 25604639 ~ 25611689 (+) True G14502
TU17932 lncRNA upstream 302822 25422443 ~ 25423026 (+) True G14455
TU17917 lncRNA upstream 359472 25363896 ~ 25366376 (+) True G14448
TU17914 lncRNA upstream 365040 25360471 ~ 25360808 (+) True G14445
TU18082 lncRNA downstream 193393 25933951 ~ 25935581 (+) True G14556
TU18169 lncRNA downstream 425072 26165630 ~ 26165982 (+) True G14623
TU18247 lncRNA downstream 472736 26213294 ~ 26215317 (+) True G14695
TU18260 lncRNA downstream 493768 26234326 ~ 26304342 (+) True G14703
TU18261 lncRNA downstream 498612 26239170 ~ 26241244 (+) True G14704
AMCG00016586 mRNA upstream 166641 25553480 ~ 25559207 (+) True AMCG00016586
AMCG00016587 mRNA upstream 183803 25534049 ~ 25542045 (+) True AMCG00016587
AMCG00016588 mRNA upstream 205683 25515479 ~ 25520165 (+) True AMCG00016588
AMCG00016585 mRNA upstream 316942 25407227 ~ 25408906 (+) True AMCG00016585
AMCG00016584 mRNA upstream 321008 25385070 ~ 25404840 (+) True AMCG00016584
AMCG00016603 mRNA downstream 138788 25879346 ~ 25887229 (+) True AMCG00016603
AMCG00016606 mRNA downstream 165566 25906124 ~ 25918145 (+) True AMCG00016606
AMCG00016604 mRNA downstream 189019 25929577 ~ 25933057 (+) True AMCG00016604
AMCG00016607 mRNA downstream 207502 25948060 ~ 25948410 (+) False AMCG00016607
AMCG00016605 mRNA downstream 215573 25956131 ~ 25958833 (+) True AMCG00016605
TU17920 other upstream 334008 25370296 ~ 25391840 (+) False AMCG00016584
TU17809 other upstream 568387 25150483 ~ 25157461 (+) False AMCG00016566
TU17810 other upstream 568387 25150483 ~ 25157461 (+) False AMCG00016566
TU17811 other upstream 568387 25150483 ~ 25157461 (+) True AMCG00016566
TU17806 other upstream 591969 25133198 ~ 25133879 (+) True G14361
TU18062 other downstream 199970 25940528 ~ 25950176 (+) True AMCG00016607
TU18064 other downstream 199970 25940528 ~ 25950176 (+) False AMCG00016607
TU18257 other downstream 545305 26285863 ~ 26289222 (+) False AMCG00016625
TU18348 other downstream 686781 26427339 ~ 26432356 (+) True AMCG00016633
TU18353 other downstream 688165 26428723 ~ 26429327 (+) False AMCG00016633

Expression Profile