RNA id: AMCG00016599


Basic Information

Item Value
RNA id AMCG00016599
length 8385
RNA type mRNA
GC content 0.57
exon number 19
gene id AMCG00016599
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25706081 ~ 25726547 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACCGGGAGACGGGACTCGTGCTGGAGGAGCGCCGGTTGCCGTAGGGGCTGACAGAGGAGCGCCTCCTGCTGGTGTAAGGGCTGTTGTCCCGCTCGTAGCTGGAGGAGCGGTGGCGCATGCCGTAGGGACTGTCTGAGCGCTGGCGGCTGCGGCGTGAGGGCTCCCGGTAGGGGCTGGGGCTCTGCTGCGGGGGTCGCCGCCGGTGATGATAGTTGTCCTCCCCATCTTGTCCGTACGCACCCCCGGAGGGGCTGTCATTATCCCCTCGCTTTGGGCTGGGAGACTGGGGGGCAGCGGCCTGCTTCCTCCTGGGGCTGCCTCGGGACGAGGGCTTGCCCTTGGGACTGGCCTTGTAGCTCTTGCCGGACTTGCGATGGCCCTTCTCGCCCCTGTCTTTCTGCGAGGAGCTGCGGGACTCCCCCCGCTCCCCGCGCCTCTGCTGCTTGTCCTTGCGGGATTTCCCCGACCGGCTGCCCCCGTCCTTGCTccgagaggaggaggaggaggaagccGTGCTGGTGCTGGTCCCCAACTGGGCCTGGACAGCAGTGGAGGCTTCGACTCGCTTGCCCACCGCTTCCCCCTCTGGGAATGCCAGTCTCCTGGACCCGGTGGGGAAGGAGGCTGGGGCCGCGGTGACAGCCTTTTCCTTTCCACTCTTGCCTGCTGCCCCCTTTTCCCTATCCTTGCTGCTCTTCTTTTTGgagccccctgccccccctcctcctccacctcctcctcctcctcctccaccccccgAGTCCTTCACTCTGTGAGGGTCCTTGGACTTCTTGTGGGGATGCCTGTGTTTGTGGCCCCGGCTGTCCCCGCTTCCACCCCCTTTACCGTAATCCGAACTGGCTTCCAAGCGCTCCCCGCCGCGGCGATCCGCCGCAGACCTGCCCGCTGGCGGGTCCGAGAAGGTGTCGGAGTCGGAGCTGATGTCGTCATATTCCACTAGAGGCTTGATGGCGCTGACGGCAGGAGGCGCCGCCGAGCCCTGGGTAACAAATGCAGGGCCCGGGCCGATGGCCGAAGATGAAGACTCACGTCCGTGTTTTGAGGATTTGTGCCGCTTGcgtttggtggaggaggaggaagacgaggAGGAGCTGGATTTGAGCAGCAGCTTCCCGTCCTTCCCCGTCATGCTCCCCGCCGAGGAGCTCAAGTGTGGCGGGAGCAGGTGCTGCAATGGCCCGCTGTTAGTGCTCCCCGGCTGCGGCTGCAGCGAAACGTTGGCGCTTGAATCCGGCTTCCTCTTCGTCCCATGATGTCTTTCTGAACCAGGCATTCCTCACGTTAGCAGCGGTCCTTCTCCCAAACGCGGGCCTCTGCAGCCGagacaatacattaaatggcGAATAAAACCCCAAAAGCTCCAGAAAAAAACAGCTAAAAAATAGAgatgttaataaaacaaacaaagattcAGCGCACGTTGTGTCCTTATGCTGTATCCGCGCTCACTCCGGCCAGGTCAGCGGCTTCTCTGCCTTTTGtaggaaaaaacatgtttacagaGAAATAAAACGAAAAAAGGTACTTCTAATAAGCGGTTGAACGTGTAGCTTTATATCTGATGTAAGACGTGTTTAAATATGAAGTCGTTATAGCGTGCTCTCCCTCCCGTTTTCAGGTTACTTGTGCTGTGttatttcttttgtaaaaacaaaaaagcaagaaaaaatcAGCAGCTCTCTGCTATGCCCTCGCCCTGTACGACCCGGGGAAGGAGCTCTAGTCCCTGCAGTTTACGCTCTTGGTTCGGAAACAAGCACAGTCCATGATGAATGGGCGATATTGTTTCaccaaattgaaaatgaaaacttgaaCCGGTTGGTACTGTTTACATGTTCGGTTTTATATATGCAGTCTTTTAATCTCTTTATATTTGATATTGGTCAGCAATGGCAGAATATTCGTGTGCAGTAGATGTTCTAGTTTATTTTGAGTGGCCTTTTGAGTCTACCAGGCCTGTATTTAGGGCGATGTTTGCGGATTTAGAACACCCACTGCCCCGGTTGCTAAGACGAGAGGACAGCCGCCATTGTGGCTCCTTCTAGCAGCTTTAgcttctgttctctctccccctccagccGAAACCGGAAGTCCCGCTGCCTGTCAATCCTGGCCGGCGCTTAGCCCCGCCTCCGTGCCGTGGCGCGCTGCAGCGGCGGAGCAAGACCGCCAGGCGTCGTCCGCCCTGGAAACACTCGGCGCCTCCGCCAGCAGGAAAAGTTTGACACAGACTAGTGAAAGTAACTATTTTAATCAACGAAACGAGAGAATGCACCAGATTGCAACCGTTTCCTCTTGTCTTGACACATCCATGTAACACAGGTGTGCGCTGCATGAGCCGGTGAATGGCAACTTGTTATGAAGCAAGACAACGTGTATATCGATCTATCCTGCGAAGTTCACCATGTTCCTCCACAACGAACCCATTTTATTACCCTTGCACATTCAAGCTTGCTCACTATAAAGCCAACATACTGTATTTTTGATATGCGATCGGGGCCATTTTGTGTGCAAACACAATATCAAAAGCGACTATGACTGCGCTAAATACGCCCGGTGCACGCCGTTTTGGTCATTATTTGTgtctcattttgtattttcccgAGCACGAGTTCTCACTAGTATGCCAGTGGAGACTCTTTCAAGTAAAATGGCGACTGGAGGAACGGTTTTAAATGGCTAATCTCTGCCAATTATAGGTCACGTGTAGTGGTTTGTTTATGGTGTGCAATGGTCGCCtctttaacacaaaataataaagcactAGTTTTCTACTGCGCTATAACTCTACAGTAACTTTAATTACCCCAACGTCTGGTGATGCACTTCATAGCAGCATTACCCTTCCGCAGAAAGCTGCTTGCTGTAGTGTAGGTACGCCATGCAAAGCTCCTCTTCGTGGAAAGCAGCAACTTTCTCCCGGCGGCTACCAtgcaataaataatgtttgggtttcaatcaatcaaaatagCAGCTCATTTAGGCCTTCCGCTCACTTAACTCTGGTTCCCAAATGGTTGCATATATTTGATGATCTCCCCTAaatctataatatatacatacagatttCTATTTGACGTTTTCGCATATTTTAGAGGTGCGTTTGCTCGTTGCTTAGTTTTTCCAGCTATGTTTTGTAAAACTGGCCCAGACAAGCTGAGTTATTGTTTCCCTTCACAATTTGTACGGAGAGGCTCGTTTCTCAAGACAAACATTAAAACGTGTCACcggattttattattttgcgcCACTTCAAACAgtcaaaataactgaaacaagaacaaatacatCGTATGAAACGCACATGTCTGTCTCCAATACTGCTCAAATGTCTGCGGCGTCTCAGACATTCTCCTTTCAAAGGTTGATGATATGTTTTCCAATCTGGCTTGTGTCGTGAGTTTGTCGCCGCCTGATGACGTCACGCCGTCTTCCCCACTCTTGAGCGGCCTGCCGTCTCGGAAGCGCTAGCGAAAGCGACGGAAGGTTTTGTGTCGAAGATGGCGGCGGTGTCGGGGGTTTCTATGCCTGGCTGCAGCCCGGCGAGAGAGCTCGGACCCGGAGCACAGTCTGCCGGGGCACCGACCCCTGGAGACCGGTCCAAAATGGAGGAGAGCACAGAGTCGGAGAAGCAGAGCCGAGTGAGCGCCCTGCTGGACAGGCTTCATGCCAAGCACTGTGCTGCCCGGCCATGGCAGGAGACAAGCAAGGTGGTGCGGCAGGCTATGGAGAAGCGTGGGGTGCCGAATGCTGGGGGTCACCAGCTGTTGCTCACCTGTCTGGAGACCCTGCAGAGAGCCCTGAAGGtgtcttcTCTGCCAGCCATGACTGACCGCCTGGAGTCAATTGCAAGGCAGAATGGGCTTGGGTCTCACCTGAGCCCCTCTGCGACCGAGTGCTATATTACCTCTGACATGTTCTATGTGGAGGTCCAGTTGGACACGGGGGGACAGCTGGTGGATGTCAAGGTGGCCCATCATGGAGAGAACCCAGCAagctgtCCAGAGCTGGTACAGCACCTCAGagacaggaatTTTGAGGAGTTTTCCAAACACCTGAAAGGCTTGGTTAACCTGTATAAACTGCCTGGAGACAAtaaGCTAAAGACAAAGATGTACCTGGCCCTGCAGTCTTTGGAGCTTGACCTCACCAAGATGATGCACATGTTAGCCACCAACGCTAACACTGTGGAGACCATCCTGCACGGCAGTGTGGGATTACTGACTTCCAGGAGTGGAGGTCACCTGGTCACTCTGCAGTGCTATGTGTCTCCCTATGATGTGTTCGAGGAAGGGACCGGTGCACTGCTCAACCTCACCGACTCCAATGTACCTCGGTCCCTGGGAGTCAGTGTGTCCGTGACAATCGAAGGGACTTCCTCCGTGTACAAACTGCCCATCGCCCCTCTCATCACTGGCTCACACCCTGTGGACAACAAAGGGATGGGCAACGCCACTGGGATCCCTGTGTTTGAGATGGCCCCCGCTATGGTGCCCCTCTATGAGCTCATCACCCAAAGCCAACTTCAGGAGGAAGGAGGCGGGACCCTTCCCCCCCACACTCACAACATGCGCTTCTATGCATCCTTGCCAGGCCAGCAGCATTGTTATTTCCTGAATCGGGACGCCCCAGTGCAGGAAGGGCGCTGTCTGCAGGGAGCGCTGGTGGCGAAGATCCCATTTCGCCACCCGGCCCAGGTCCCTGCCCTGCTGGACATTATACGACATCAGGCCGCCTACAACACGCTCATCGGCAGCTGTGTCAAGCGCACCCTGATCAAGGAGGATACCCCCGGGTTGTTGCAGTTTGAAGTGTGTCCGCTGACAGACTCCAGTTTCAGTGTTTCCTTTCAGCACCCTGTCAATGAGTCCCTTGTCTGTGTGGTAATGGAGGTGCTGGAAACACGGCAAGTCTCCTGTAAGCTGTACAAGGGCCTGTCTGACGCCCTGATCTGCACTGATGACTTCATCACCAAGGTGGTGCAAAGgtgTATGTCAATTCCAGTGACCATGCGAGCCATCCGGAGGAAGGCAGAGACCATCCAGGCTGACACCCCAGCACTGTCCCTAATAGCGGAGACTGTGGAGGACATGGTGAAGAAAAATCTACCCCCTGCAGGTAGTCCAGGATACGGCATGGGCACGGGAGGAGGAGGCAACCTGATGGGCATCCCTGGGGGCGGAGGGGGCAGCACACCCACTGGAGGGGGCAGCAGTGGCATGGGCATGGCGGGAGGAGGGGGCGGCAGCTCTTTCTCTGGCCCCATCAGCACCCTCCCCACCCCTCAACCTCCCTCTGTGGGCCCTCAACCCCACCACACCCCGCCACCGGCCTCCTCACCAGCCAGCAACACCAAGAACCACCCCATGCTGATGAATCTGCTGAAGGATAACCCCTCTCAGGACTTCTCCACCCTCTACAGCTCCAGCCCCCTGGAAAGGCAGAACTCCTCTGGGTCGCCACGCACTGACAGCATGGGCGGTGGCTCCTGCCCCGGCAGCGGTGGCAAACCAAAGAAGAAGCGTCCGCGTGGATCTGAGAAGGGAGAAGGTGTACGCGGAGGCATGGGGCTGAAGCAGCAGGGCTCCCTGCAgcaacaccaccaccatcagCATCACCAGACCGAGGATGACTTTCACAGGGAGCTCTTCTCCATGGACGTTGATGCCTCCCAGAACCCCATTTTCGATGTGAACCTGCCTGGAGACGGGCTGGACACCCCCCACAGCATCACGCCGGCTCCCAGTCAGTGTGGGACACCTCCCACTGGGGCTGGGGTGCCGTATCACTCCCAGGCTCACTCCCAGTCCCActcccagcagcagcaacagcagcaacaacagcaacagcagcagcagcagcagcagcagcctcctGGCCTGCCCCGAATGGTGCGTCTCTCCAGCTCTGATAGCATCGGAGCCGACATCAACGAGATCCTGTCGGACATCCCCGAACAGACAACCAAAATGCAGGGAGGAGGCAGCGGTCATGGGCAGCACCATCACAGTCTGGGGGGGGATGACGGGGGGCCTCTAGGTACTCCTATCCGTGACTCTTCTAGCTCTGGCCAGGGCAGTGCAGTGTTCGAGGCCGACCTCTTCAACGCTGGCAGTAATGAGAACCCCTTCACTGACCCGGCTGATCTGATTGCAGAAGCCGCCACAGCAGCCACCCCCAACAGCGACTCCTCCTCCACCAATTTCTTCCCGGACGCAGTGGACTTCAACCCCGAGTTGCTTGCCAGCCAGGGTTTTCCCCCAACCTACTTTGATGACAGCTCGCCCAGTGCAGACGGAGACCTGGACCTGGTAAAAGGGTTTGGGGGGGGGAGCCAGCAGCACACCCCAGCAGGCACCCCACAGAACCCCACCTCCCATGGTCGGTGTACCCCTGATCCCTCCATGAAGGATCCTTTTGAGATGAGCATGGTTTTTGGGGGCAGCGGGGGAGGAGGTAAGCCTCTTTTAGGAGGACCCTTACCTGCTCCTGACTTAGGAGACCCCCACTCGTCCCACTCCGGTGGAGGCCAGAGTCCCCTGTTGATAGGGTTGGGAGACATGGGTGGCACTGACTTCCGAAGCGATTCCAAATCTAAGCAGCAACAGATGATGCGCGGAGGGGGCAAAGAGGGGAACGGAGGAGGGGGGGGCTCAGCTCTGGGAGGTGGAGTTGGGGGGTCCTTGGAAGGGAAGCAAGGCAAGCGCAGTCGCACCCCCTCCAGCGATGGCAAGTCAAAGGAGAAGCCCCCAAAGCGCAAGAAATTGGACCCTGACGGGAAATCCCCCTCCCACAGCTCTGGGGGCCGACCCTACACCCCCCCAAGTGGCAGTGTGGGCTCTGGAGGCTCTATGGGGGGAGGTGGAGGATCCAAATCCCCAGGCAGTTCCGGCCGGTCCCAGACACCCCCAGGAGGCGCAACCCCACCCATCCCCAAAATCACCATCCAGATCCCGAAGGGCACTCTGACGGGGGGAAAGACCTCCTCACATGGGGGCTACACATCCAGCAGCTCAGCTGGGGGGGGCGGCGGGGGAACAGGAGGTGGCGGGGGGAGCAAGAGCCATCActcccactcctcctcctcctcctcgtcggGGAAGATGAAAGGCAGCAAGTTAGAGGGTTCGATGGGGCAAGGCGGTGGGCCCAAGCCAGGGGTCAGTGGTGGCGGCAGTAGTGGAGGGAGCTCCCAGTCTAAGGGCTCCTCCCAGGGACTGGGTGGGGGAAAGCCAGGCTCCTCCCCCATCACAAAGCACGGGTTGGCAGGGGCAGGAGGGGGCGGCAGCATTGGAGGTGGAGGCAAGATGAAGCCGCAAGGGGGCAAACCGCCAGCCTCTCTCATCAACCCCAACATCAAGCCTAACATCTCTCCTTCACACTCCCGTGGTGGCAGTGCCTCCGACAAGCTGTCTTCTCCCATgaagctgcagcagcagcaggtccCCGGCACGCCCCCGTCCTCTAAGGCCAAATCTCCCATGGGATCAGGGGGCGGGGGCTCAGGAGGCGGCTCTAAGTCATCCTCTGGCAGTGCGATGGGGTCTCAGAAGCAGCAGATGGGTGGTACTTCCTCCTCAGGATCGTCGTCTTCCTCATCgagttcctcctcctcctctagctcctcctcttcctcttccagtTCCTCCTCCTTCTCGGCGGGTTCACAGTCGCAGTATGGGGGCGGGGGTGGAGGGTGCAACAATCCCAACGCCAAAGGCAAATCACCCAGCCGCAACAAGAAGCCCTCCCTCACTGCCGTCATTGACAAGCTGAAGCACGGCGTGGGCAccggtggggtggggggtgaggagGGTGTGGACGGAGGCTGTGGGGGTGGCGTTGGGGTGCCTCCCAATATTGGGCCTCCAACGTCCAAGCATGGCCTCTCATCTCAGGGCGGCGAGTACCTGAGCAAGAGGGAAAAGAGCGACAAGGAGGGCAAATCCAAAGTGTCTGTGTCCAGTGGGGGGTCAGGAGACAAGAAAAACATGGACTCCAAAAGCGGGGGTGTGAGCAGCACTGGAGTGGCCAAGATCATCATCAGTAAACCGGACGGGGGCTCACCCAGCATCAAAGCCAAGGTGACCCTGCAGAAGCCCGGTGAGGGCTCAGTGGAGGCCATGAGGTCCCAACTCTCTGGCCCGAAGGCCTATGGCTCACCTCTCTTCAGTGCCTCCACCCCCAAACATGACCGCTGTTCCCCCAGCCACAGCCGCTCACCCGGTTACACCCCGCTCAACCCCGACAGCGAGAGCGAGTCTGGCAGCAGCTCGGTTGCAGAGAACCCAGCTTACCTGCATAATGAAGATGACGACCTCATGGACTCCGCTCTCACCGGCAATCTCCAGCCCTTCAAATAG

Function

GO: NA

KEGG:

id description
K15144 MED1; mediator of RNA polymerase II transcription subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18019 lncRNA downstream 30881 25672304 ~ 25675200 (-) True G14517
TU18009 lncRNA downstream 97022 25604780 ~ 25609059 (-) True G14507
TU17998 lncRNA downstream 160356 25543046 ~ 25545725 (-) True G14496
TU17979 lncRNA downstream 185985 25516989 ~ 25520096 (-) True G14487
TU18107 lncRNA upstream 191483 25918030 ~ 25921548 (-) True G14578
TU18115 lncRNA upstream 245239 25971786 ~ 26022263 (-) True G14585
TU18117 lncRNA upstream 246987 25973534 ~ 25979563 (-) True G14587
TU18197 lncRNA upstream 371181 26097728 ~ 26098972 (-) True G14650
TU18219 lncRNA upstream 421758 26148305 ~ 26149084 (-) False AMCG00016617
AMCG00016600 mRNA downstream 2754 25676569 ~ 25703327 (-) True AMCG00016600
AMCG00016597 mRNA downstream 63748 25611563 ~ 25642333 (-) True AMCG00016597
AMCG00016594 mRNA downstream 222371 25449909 ~ 25483710 (-) True AMCG00016594
AMCG00016596 mRNA downstream 256329 25439336 ~ 25449752 (-) True AMCG00016596
AMCG00016595 mRNA downstream 267306 25433834 ~ 25438775 (-) True AMCG00016595
AMCG00016601 mRNA upstream 98199 25824746 ~ 25825846 (-) True AMCG00016601
AMCG00016614 mRNA upstream 378369 26104916 ~ 26117450 (-) True AMCG00016614
AMCG00016617 mRNA upstream 420963 26147510 ~ 26149543 (-) True AMCG00016617
AMCG00016615 mRNA upstream 425064 26151611 ~ 26155450 (-) True AMCG00016615
AMCG00016616 mRNA upstream 432479 26159026 ~ 26159922 (-) False AMCG00016616
TU17858 other downstream 428603 25273664 ~ 25277478 (-) False AMCG00016579
TU17849 other downstream 622382 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 690738 25012364 ~ 25015343 (-) False AMCG00016562
TU17766 other downstream 694303 25011341 ~ 25011778 (-) False AMCG00016562
TU17725 other downstream 823983 24881148 ~ 24882098 (-) True G14305
TU18038 other upstream 26448 25752995 ~ 25754472 (-) True G14534
TU18183 other upstream 354956 26081503 ~ 26083167 (-) True G14637
TU18222 other upstream 429974 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 455197 26181744 ~ 26184778 (-) False G14676
TU18226 other upstream 455197 26181744 ~ 26184778 (-) True G14676

Expression Profile