RNA id: AMCG00016600


Basic Information

Item Value
RNA id AMCG00016600
length 3064
RNA type mRNA
GC content 0.51
exon number 15
gene id AMCG00016600
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25676569 ~ 25703327 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGACGCGAGCGGCAGTGTTTACACTCTCCTCCGCGTCAGCGCCGCGTTTCCCCGCGTCCTCTGCGTGTTTCGGCATCCAGGATGGGGAAGGAGGTGAACGGAGTGTCGCGCAGCCGGTTCGAGATGTTCTCGAACAACGACGAGGCTGTCATCAACAAGAAACTGCCCAAAGAGCTGCTTTTGCGAATCTTCTCATTCCTGGACGTTGTGACGCTGTGCCGCTGTGCTCAGGTCTCACGAGCCTGGAATGTTCTCGCTCTGGACGGCAGCAATTGGCAGAGGATCGATCTCTTCGACTTCCAGAGAGACATCGAGGGACGCGTAGTGGAGAACATCTCAAAACGCTGTGGTGGCTTCTTGAGGAAACTGAGCCTGCGGGGCTGCCTGGGGGTGGGGGACAGTGCACTGAGGACCTTCGCCCAAAACTGCAGGAACATCGAACTGCTCAGTCTGAACGGCTGCACCAAAATCACCGATGCTACCTGTACCAGCCTCAGCAAGTTCTGCCCCAAATTGAAGCACTTGGACCTGGCCTCCTGTACGTCCATTACCAACCTGTCGCTGAAAGCACTCAGtGAAGGGTGCCCCCTGCTGGAACAGCTTAATATCTCCTGGTGTGATCAGGTGACCAAGGATGGCATCCAGGCGCTGGTACGCTGCTGCCCAGTATTAAAGGGGCTCTTCTTGAAGGGCTGTACCCAGCTGGAGGATGAGGCGCTCAAGTACATTGGAGCGCACTGTCCAGAGCTGGTGACACTAAACCTGCAGACCTGCTCGCAGATCACAGATGAAGGGCTGATCACCATCTGCCGGGGGTGTCACCGTCTGCAGTCGCTGTGTGTATCTGGCTGCGCCAACATCACAGACGCCATCCTTAACGCCCTAGGACAGAATTGCCCGAGACTCAGAATACTGGAGGTGGCTCGCTGCTCCCAGCTCACGGACGTCGGCTTCACCACGCTGGCTCGGAACTGCCATGAGCTGGAGAAGATGGATCTAGAGGAATGTGTGCAGATTACAGACAGCACGCTCATCCAGCTGTCCATTCACTGCCCGCGGCTGCAGGTCCTGAGCCTGTCGCACTGTGAGCTGATCACGGACGACGGTATCCGTCACCTGGGCAGCGGCCCCTGTGCCCACGACCGCCTTGAAGTCATCGAGCTGGATAACTGCCCCTTGATCACAGACGCCTCGCTGGAACACCTAAAGACCTGCCACAGCCTGGACCGCATTGAGCTGTACGACTGCCAACAGATCACCAGGGCTGGCATCAAGAGGCTCCGGACGCATCTCCCCAATATCAAAGTCCACGCCTACTTCGCCCCTGTCACCCCACCCCCGTCGGTGGGAGGGAGCAGGCAGAGATTCTGCCGCTGCTGCATCCTGCTATGATGTcactgctgcccccccacctccactcCCCACCTCCCGGACACTGTACAGATACCTAGAGACACTGTAGCTGTGTGAGTATCCCACACATGCGTGCGCCCTCCGCCCACAGGTGTGTGCGTGTCCTATGTTCCTAGCACCTTGCTcccccatccccaccccccacagtGGTGCCAGGTTTCTCTGGGAGCTGGGGGCCCCCCGACAGTCAGGATGACACCAAAATACATCACAGGGCAACGCCTGCGACATTCCTCCCCATCCTCACACGCTGCGCACACAGGATCATGTCAACATTCCCAGGTCATAGCATTAACGGACTCCCTCGTCTTCCCTTTATGATTTTGCAACAGACTAATTCTTCCCAATATTGAATGTTTGGATTTTGCAGGCTCAAGGCTTCTCTGACACGGCCTCATGTCAGGGAGATGCTTCATTGCATATTGATTTGTTCCCCTACTTCTGATGCACTATTAGCGAGTTTGTTGGCTCTGCGCAGTGGCTGTAATCCACCTGAAATGTAATCGAAGCCAATCCGTTCACCAGACGCACAGAATCAAAGGTTGTCTGTCATCCTCCTATACACGAAAGCGTTAACCCTTTTAACTTGTTGTCTGAGCAGGGTTCCCAGTATTGTGCTTTGAAGTACTATCCAGACAATCCAGTCTTGTCGGGTACATCAAACCAGCGTAAACTGCGTtcattcagcaaaaaaaaacaagttttctGTGGGGGTTTACTAGAAGTTAGAAAGTCTGCTTTgagtgcagtttgttttttcagatacAGGTATTCCATGAGATCGTGTTCTCTCACAATTTGTAAAGGACTGACAGaggatgcacaggaacttcctTATAAGATATTATGGAGAAATACAACCGCCACCGTGTGCTCAATAACTGGTGTCCTTCCAAAACAGGCCTCTGGGATCCTCAAACTCGACAGGACCATCAAAGTGCGCAGAATGACTTTTTAACAGACTGGTTCATTTGAAAGGCACACCCATCTTGGATTGTGTGGTTCTCCTCATAGCTGGTGAAGCAAGTATATTCGGTTCTAGTCTATTttaatcagtcaattaaaataaatctctgaaTTGACCCCACTCTGACAACTAGGCATAAAGGGGCAGATTTATAACCTCCCCTACTACACTGAGGAAAGATGTTGTGAGGACTCTCTGTTGTGGATGATGAGTAACAGACCCCctacctctccctcttcccAGTACTTCCTGATTCGCTGCCCTTGATCCTGTGTAGCTCTGGTGcccctcaacacacacagacacaacgtCCCCCTCTCCATTCCACATAGTACTTAagaaattcatatattttttataaaggaaCAATGAGatttaaggaagaaaaaaaactgagaaaatgcCAAATGTTGCATGTTTCAATTatagttttttaatataattgtgtacatatgtaagtactgtatatatcttATCTGTGGGAGCTTCTGCCACTCAGTCATGGACTACACTCCACTGAATCTCACTGTTCAGCCCAGATGTAAAACCTCTGCTCCAGGCATGgaataaaaaagacaacatgGAGGCCGTGAGCACAGCGACAAGCTACAGATGCTCGGATCAAGGAAAGGCTTGTTTTCCCCCCACTGATGCTCATTCATTTTTCAAGCTGGTTACACTTTT

Function

GO: NA

KEGG:

id description
K10268 FBXL2_20; F-box and leucine-rich repeat protein 2/20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18019 lncRNA downstream 1369 25672304 ~ 25675200 (-) True G14517
TU18009 lncRNA downstream 67510 25604780 ~ 25609059 (-) True G14507
TU17998 lncRNA downstream 130844 25543046 ~ 25545725 (-) True G14496
TU17979 lncRNA downstream 156473 25516989 ~ 25520096 (-) True G14487
TU17984 lncRNA downstream 156473 25516989 ~ 25520096 (-) False G14487
TU18107 lncRNA upstream 214703 25918030 ~ 25921548 (-) True G14578
TU18115 lncRNA upstream 268459 25971786 ~ 26022263 (-) True G14585
TU18117 lncRNA upstream 270207 25973534 ~ 25979563 (-) True G14587
TU18197 lncRNA upstream 394401 26097728 ~ 26098972 (-) True G14650
TU18219 lncRNA upstream 444978 26148305 ~ 26149084 (-) False AMCG00016617
AMCG00016597 mRNA downstream 34236 25611563 ~ 25642333 (-) True AMCG00016597
AMCG00016594 mRNA downstream 192859 25449909 ~ 25483710 (-) True AMCG00016594
AMCG00016596 mRNA downstream 226817 25439336 ~ 25449752 (-) True AMCG00016596
AMCG00016595 mRNA downstream 237794 25433834 ~ 25438775 (-) True AMCG00016595
AMCG00016590 mRNA downstream 252910 25421283 ~ 25423659 (-) True AMCG00016590
AMCG00016599 mRNA upstream 2754 25706081 ~ 25726547 (-) True AMCG00016599
AMCG00016601 mRNA upstream 121419 25824746 ~ 25825846 (-) True AMCG00016601
AMCG00016614 mRNA upstream 401589 26104916 ~ 26117450 (-) True AMCG00016614
AMCG00016617 mRNA upstream 444183 26147510 ~ 26149543 (-) True AMCG00016617
AMCG00016615 mRNA upstream 448284 26151611 ~ 26155450 (-) True AMCG00016615
TU17858 other downstream 399091 25273664 ~ 25277478 (-) False AMCG00016579
TU17849 other downstream 592870 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 661226 25012364 ~ 25015343 (-) False AMCG00016562
TU17766 other downstream 664791 25011341 ~ 25011778 (-) False AMCG00016562
TU17725 other downstream 794471 24881148 ~ 24882098 (-) True G14305
TU18038 other upstream 49668 25752995 ~ 25754472 (-) True G14534
TU18183 other upstream 378176 26081503 ~ 26083167 (-) True G14637
TU18222 other upstream 453194 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 478417 26181744 ~ 26184778 (-) False G14676
TU18226 other upstream 478417 26181744 ~ 26184778 (-) True G14676

Expression Profile