RNA id: AMCG00016610


Basic Information

Item Value
RNA id AMCG00016610
length 4012
RNA type mRNA
GC content 0.56
exon number 8
gene id AMCG00016610
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26137776 ~ 26146976 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGGAGGCTCACGGACAGCGAATGTCGTCATGAGCGACCAACAGGACAGCATGGCCGCCACAGCAGCTGTCAGTCCCAGTGAATATCTGCAGCCCTCTGCCACCTCAGCACAGGACTCCCAGCCCTCCCCCCTGGCCCTCCTCGCCGCCACCTGCAGTAAGATCGGCCCCCCTGCAGCCCAGGCACCCGTGAGCAGCACCCCCATCCAGCCAGCTGCCCGCAGGCTGCTGCCCATCAAGCCTGCGCCCATCGCACCAGCGCCACCCAAGAACCTGGGCTTCCTGTCTGCCAAGGGCAGCGTGATCCAGCTGCCTGCTGGGTTGGGCTCCTCAAACCCGGGCGCGCCCCTGCTGCTCACCATCCAGAACCCAGCCATGTTGAGCAAGCCCGGCCGCGCCGGCACCAACATCCAGTACCAGGTGGTGCCGCAGctgcagggtggtggggggcagaCTATCCAGTTAACGGGGATGCACCAGGGTGGCCAATTCCAGATTCTCCCCGGCACCAACCAGGCCATCCTCACCACgccctcccccgcccccccgcagCAGCATAAGACCGTTGCCATCAAGCCCTCCCAGCGGCGGCAGAGCAGCGTGGTGCGTCTGCCCAGCGGCTTCACACTGCCCCTGAGCATGGGGGAGGCGGGGGGCGAGATCGTCACCACAACCGCACCCGCTTCCCCTGTTAAGACCGCTCGCCGCTCCCGCAAGAAGCTGGCTGCTGCCGCGCCCCCCCAGCAGTCCCCCCCTCCAGCCATGGCAATGACTGAGCAGGTGGAGACGCTGCTGATCGAGACGACTGCCGACAACATCATACAGgctGGCAATAACCTGCTGATCGTACAGAACCCGGGCGGGGGGCAGCCGGCCGTGGTGCAGCAGGTGCAGCTGGTGCAGCCCAAGCAGGAGCCGCAGGTGGTACAGATCCCCCCACAGGCACTGAAAGTGGTACAGGCCGCCTCCGCCACCCTGCCACCCGTCCCCCAAAGACAGCCGGCCCCCAGCCTGCAGGTCACGCCCTCCGAGCCCACACAGGTCCTCATCAAGACAGCGTCAGGAGAGTGGCAGACGGTGCAGCTCCAGGAGACCATGGTGGCCACAGCAACATCCCCCTCCAGCTCCGGGGGTGGTGGGCTGGCTTGCCTGCCCTCGGGGGGAGGCAAGAAAGGCGGTCCGGGGGGGCGCAGGGAGCGCACGCTGCCAAAGATCGCACCGGCGGGGGGGCTGCTGGCCCTGAGCGCTGCCCAGCTGTCCTCCGCAGCGCAGGCCGTCCAGACCATCAGCATCAATGGCGTCCAGGTGCAGGGCGTGCCCGTCACCATCACCAACGCCGGCGGCCAGCAGCACCTGACAGTGCAGACGGTGCCAGGCAGTGGGCTGGCGATCGGAGGGGTGGGCGCATCTCAGGGCCACCAGCTGCAGGTGGAGCACACGCTGGCGCTGGACATCCAGGGGGCGCCGGGGGAGAAGAAGCGTCGCATGGCCTGCACCTGCCCCAACTGCAAAGACGCGGAGAAACGGCCGGGGGAGATGGGTAAGAAGAAGCACATCTGCCACATCCCAGGCTGTGAGAAGACGTTCCGGAAGACGTCCTTGCTGCGGGCGCATGTGCGGCTGCACACGGGGGAGCGGCCCTTCGTCTGCAGCTGGGTCTTTTGCGGCAAGCGATTCACACGCAGCGACGAGCTGCAGCGGCACGCCAGGACACACACAgGGGACAAGCGGTTCGAGTGCTCGCAGTGCCAGAAGCGGTTCATGCGCAGCGACCACCTCACCAAGCATTACAAAACGCACATTAACACCAAGAACTTGTGAAGCATATTTAagaaatcataaatatatatatatatatattaaaagaaacgGAAccgtatataaatatatatacaaaagaaaCCGAACTGACTGGGCTCCAGGAGGTGGGCATCCTGTTTGGAGGGGATGACACCCGAGACGTCCCACACCGCCGCCCCCCCAACTGTTAGCCTGCCCCCCGCCAGCACTGGTGCCCCCTCCCCTGCTACGCCTCTACTTCTGACCTTCGTCTGGCTGATGAGGGACCGGACGCTGCCTCATGCTGCCAGGTCAGCAGCGCCCCCCCCCTGGACATGGCAGGAAGCGCATGCCCCCCCCCAGGATTCTGAAAGGATGCTGCCTCCTCCCCCTCAGTTCTAAACTGACCCCTGGCGCCTGGCCGCTCACCCTGCTCACCGCAGCTCGCTTCCTGGACACGGAGAGACGGCGTGCCAAGTGTCCTTCAGCGTGGGCGGTGCGGGGCTGACGGCCCCGTTTTAACCCGTctgttgtaatatatataaatataggatATTGGACTGTGGAGACGCAGAGCAGTGAGGGAGGACAGGAGGCTGCGCAGTGTAACCCAAGTGCAGCACAGAGACGAGTAGCTCCTTCCTGCTCTGtatgaaagtgaaaaaacaaactctcGGAAGATTTTTTCTATTGATAAAGTTGCCTTAGATTAATTGCACCCAGTATTAAAGGAGAATTGTCTATGGTGAGGACGCGCTCCACTCGGCTTTTTGgtcatttcagtttatttattttttgtttactttttatttctcattgctAAAGCCACTCTTTTGCCTCTTTGGTCACTTATTTTCCTCCTTAATTTGCTTTCTGGCTGAATAAAACCCCCAGGCAAGCGAGGGTATGAGGGCTGTGTACGCAGTGTGGAGGGGAGGAGTGGTGCCAAGTGGGGCTGCAGCTACAAGCCTCTGTCAGTCATTCAGGAGTTCATCCAtctctgtttttccatttgtttttagttttgtttagttttattaattttgtttgcctCCTGTCCTCCATGTTTGCTATGAAACCACTGGTGCTGCAGTAAAAACACTCCCCTCTTCTTCCTGCTCCCCAAAACCCAGCTCGTCTCTGTCCCCCAATGCTTCGGCCAGTCAACAGGGTCTTTCCCTCCTGTGGGCTCAGTACAGGAGCTCTCCAGCACAATAGTCTTGTAATCATTGTTGccaacaatttttttttatttgtatttttttattaatggctTGTAAAAGTGTGGCAGCCCTTGGTCTTGTTGTATCTAACaactgtgattttgtttttgtttgttcttaaatcTGCACACTCCTCCTGACGGACAGCACTGAGTTTTGATTGGTTTTGATTGTGACAGAAGAATAGGTTGTGATCGAGGAGCGGCTGTGAAAGACTGGGAATCAGCCCTCTGGGACCAGATATCGGTAATGTTTCGCTTTGGAGCAATAAAGCAACCAGAGACTAAACTCTTAGTATCAAATTGAAGAGCACTAATATGTCTTTGGAcagcttgtttgttgtttttaaaatacagatgtttttaaatcttttaaatatataattaagaaaaagcAATGGTGCCGATTTGTTCCTGGAGCACGAACACTCATGAACTGTGGGCCTCAGCTTAGTCTGTCCGTTTGGTTCTGCCGTTTAACAGACCGGAGTTGAGGTTTTtctcgttttttttgttttcctcagcaGTGCAATGGCTGTGCGTCTAGTGCAGTAATCAGAGCTGGTGTACCTTTACCCTTCAGGGCAGAACATACAAGCAGGACACCATTTCCACATTTGTCAGAGTAAAGACACACCTTGtgcagtattgtgtgtgtgtgtgtgtatgtgtgtgtaccgATACTGAGAGCAAACGGCCGTACTGACCCACTGGCTCCAGCAGAATTCCTTCTCCACTGTCTCGGTTCCTCCCTCCTCTGTTAGACGTCAGCTCCACGGCCGGCTGTGCTGAGGGACTCTTGCCCCTCCCGCACATTAACTGCAGCTCTGCGTCTAGCCAGGCAACCTGGGCCCTGAACAGCACCGGCACTGAACTCGCTTGGCGCTGCTGCGCAGACCCTCGGTTTCCTGCTCcttcattttccttcattttgtttttatttttccttttctctcgtACCAGCTAAGTGAGAACAGTGTTGCTACCCTAATAAACAGACCCGTCTTTCAC

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K09192 SP2; transcription factor Sp2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18082 lncRNA upstream 202195 25933951 ~ 25935581 (+) True G14556
TU18012 lncRNA upstream 459427 25672259 ~ 25678349 (+) True G14510
TU18004 lncRNA upstream 526087 25604639 ~ 25611689 (+) True G14502
TU17932 lncRNA upstream 714750 25422443 ~ 25423026 (+) True G14455
TU17917 lncRNA upstream 771400 25363896 ~ 25366376 (+) True G14448
TU18169 lncRNA downstream 18654 26165630 ~ 26165982 (+) True G14623
TU18247 lncRNA downstream 66318 26213294 ~ 26215317 (+) True G14695
TU18260 lncRNA downstream 87350 26234326 ~ 26304342 (+) True G14703
TU18261 lncRNA downstream 92194 26239170 ~ 26241244 (+) True G14704
TU18322 lncRNA downstream 233075 26380051 ~ 26382420 (+) True G14755
AMCG00016611 mRNA upstream 3001 26122437 ~ 26134775 (+) True AMCG00016611
AMCG00016613 mRNA upstream 35063 26099372 ~ 26102713 (+) True AMCG00016613
AMCG00016612 mRNA upstream 41768 26086899 ~ 26096008 (+) True AMCG00016612
AMCG00016608 mRNA upstream 54512 26056769 ~ 26083264 (+) True AMCG00016608
AMCG00016609 mRNA upstream 118855 25982957 ~ 26018921 (+) True AMCG00016609
AMCG00016621 mRNA downstream 34423 26181399 ~ 26184860 (+) True AMCG00016621
AMCG00016618 mRNA downstream 47445 26194421 ~ 26198373 (+) True AMCG00016618
AMCG00016622 mRNA downstream 52513 26199489 ~ 26212158 (+) True AMCG00016622
AMCG00016620 mRNA downstream 86138 26233114 ~ 26237577 (+) True AMCG00016620
AMCG00016619 mRNA downstream 114756 26261732 ~ 26264293 (+) True AMCG00016619
TU18062 other upstream 187600 25940528 ~ 25950176 (+) True AMCG00016607
TU18064 other upstream 187600 25940528 ~ 25950176 (+) False AMCG00016607
TU18026 other upstream 397218 25725848 ~ 25740558 (+) False AMCG00016598
TU17920 other upstream 745936 25370296 ~ 25391840 (+) False AMCG00016584
TU17811 other upstream 980315 25150483 ~ 25157461 (+) True AMCG00016566
TU18257 other downstream 138887 26285863 ~ 26289222 (+) False AMCG00016625
TU18348 other downstream 280363 26427339 ~ 26432356 (+) True AMCG00016633
TU18353 other downstream 281747 26428723 ~ 26429327 (+) False AMCG00016633
TU18379 other downstream 458550 26605526 ~ 26657425 (+) False AMCG00016635
TU18699 other downstream 1399018 27545994 ~ 27547609 (+) False AMCG00016683

Expression Profile