RNA id: AMCG00016611


Basic Information

Item Value
RNA id AMCG00016611
length 3970
RNA type mRNA
GC content 0.59
exon number 10
gene id AMCG00016611
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26122437 ~ 26134775 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATAACGGGCAAGATATGTCTCCGGATTTTGTGTTGATGCGTCTGGTCTCTGCCGCCGAGGACGACCACTTGGACGAGGAGAACGGGAATGTGTCGTCCGCCGGCAGTGTGGTGGGCTTCGGGGCTTCGGTGCTGGCGCACCACCACAGCAGCGCCATCAAGAACGGGTTCGAGCTGAACCACGCAGCGGGCCAGCCGCGGCCCACCAGCCCCAACCAGCCGTACAGAGTGCAGCCTGGCAGCGGAACTTGCGCACCTGACGACGGTGTGATGGTAACTCGGCCGTCCCagcctcctccgcctcctcccccTGACTCCGCTATGGCCCAGCGATTCGAGTTCCCTCACCGGGCCAAGGGCTCCCGACCGCAGatcatggtgttcaggaatctCCTACGGGCGGGCGACGGTGGCAGGGAGTGCGGGCTGGAGCAGCAGGGGCTGCCGCTGAGCGACGCCGAGAGGCAGGCTGCGGGCTCCGTGTTCACGGCGAGCCCCGGCGTTAACAACAACTCACACTGCAGCGGGGATTCGCCGCAGCAGCACCTGTCACAGAAGCCACGATGGAGTCTGCATCCCCGAGTGAAACTGCCCCGCTGCCCCGACACCAGCAGCCTCCACCGCGGTGGTCCCGAGCTGTGCCCTCGCCACCGCCTGGCCACAGACCCCCCGGATTGGCCGCCCTCGGCCGGGCTCCTCCTGGACGACAAGTCGACGCACCACGATATCCTAGACCCCAGGTGGGCCGCCACAAAGGGGGGGACTGAACCTCGCCTACCCGGGGATCCCATGTTTGATTTGGCCAGGAAATTCGGGGAGCTGGGGGTGGACAAGGCCTCGAAGATGCTGTTCAAGGAGGGAGAGTTGCCGCACTGCCCTTGCCAGGGCATCCTGGGCCCGGCCAGTGTGGGCATTGGGCCCGGAGAGGACCCTACGGAGACCAGCGACGCCCTGCTGGTCCTGGAAGGGCTGGGGGCAGAGGAGGTGGACGGGCTGGACATCAATAGCTGCTCGGAGGAGGATTTTAATGACAGCAGCGGCCGGGCTTTCATATTGAACGGGAAGGGAGATGTGGTGCAAAAAATTGCAAGCGGCTTCGCCAGCAGCGCCCTGACAGGGCTGATGAGGCAGGCGGAGAGGGCAGTGGGGGAGGGCTGCTGTCCCGGCTACAGAGACCCGCAGGTCTGCTGCCCGCTGCCCGGGCCACCGCAGAGCCGAGCAGGCCCAGACGACAGTGATCAGTTCTCTGACGCGTCCACTCCGATAGGGGTGTCTCCGTGCGGGTCCACACTGGATCTCCCCGCCCCGGCCCAGACCCACACCCAGAGCCCAGCTCCCAAACTGCGGGTGGGCAGGTGCGCCAGCTCGCCCCTGGCACTGTCCGTAGCCGGAGGGGATGCCGACAAAACACTGAGAGTGCCCGGCAAATCCCGGAAGGGCTCTCTGAAAATCCGCCTGAGCAAACTGTTCAGAACTAAAAGTTGCAATGGCTCCAACGACCCACTGGACAAGAGGCCATCGGTGGACCTGGCAGGGAAGCCCCGGCTGACTAGGACTCAAAGTGCCTTCTCTCCCGTCTCCTTCAGCCCCGTCTTCACAGGTGAGACCGTGTCTCTGGTGGATGTGGATATTTCTCGGAGGGGAGTGAACTCTCCACACCCTCCCACGCCCCCTCCGCCCCCGCGTCGCAGCCTTAGTCTGCTCGATGATATAAGTGGGCCGCAGCCAGGGCCTTTCCTAGTGAGTGTTGTTGGGGCTTCCCTGCAgtccctccctctgcctcctcctccttcccatGCCACCATCCAGCATAGCCTCAGCCTCAATGTGCAAGCCCCACCCCCGCTGCTGTGCCCCCTGAGTCGCCCGGACGCCAGCAGCTTTGCAGCCAGCCTGCGGGAGCTGGAGAAGtgTGGCTGGTACTGGGGGCCGATGAACTGGGAGGACGCGGAGATGAAGCTGAAGGGTAAGCCGGACGGCTCGTTCCTGGTGAGGGACAGCTCGGACCCGCGCTACATCCTGAGCCTCAGCTTCCGCTCGCAGAGCATCACACATCACACCCGCATGGAGCACTACAgaggcacatTCAGCCTGTGGTGTCACCCCAAGTTCGAGGACCGCTGCCACTCGGTGGTGGAGTTCATCGAGCGTGCCATCATGCATTCCAAGAATGGCAAGTTCCTCTACTTCCTGCGCTCCCGTGTGCCAGGtctgccccccaccccagtgCAGCTGCTGTACCCTGTGTCTCGCTTCAGTAATGTGAAGTCCCTGCAACACCTCTGCCGCTTCCGCATCCGCCAGCTGGTCAGGATCGACCACATCCAGGAGCTGCCTCTGCCCAAGCCTCTGATCACATACCTGCGGAAATTCTACTACTATGACCCCGAGGAGGAGATGTACCTGTCACTCAAGGAGGCACGCAGCAGCCTGAGGGCGGAGTCAGAGGCAGAGTCTCAGACGTTTCTGGCCGGGTTGGAAGCTGTGAACTGGACAGTGTGGGCGGAGTCACTGACTGAAAGGGGGTGTGCCACCTAGAGCCCAGCCCCTGCTGTCAATCAACAACATGTGGTTCACAAGGTATCTCATCGCTATGGCAACTGAAACTGGAGTATTTCACCCCctcaccccctcctcctctccttcttccCTGATTTGCACATGGAGGGGGTCAGTGGATTTAACTGGAAAAGACTGCGACACTGGAGTCCAAACTGGaataaactgaactgaaaacattAACAGTGAATTTGAGGCTAGACTGTAACCCTTGCTGTCAGTGCTGCcccactcctccctctctctctctccctctcactcactcGCTCCCTGTCTGGGTTCAGTTTGAGGTCAGTCTGTCTGCCGAGCCCAGTTTCCTGCACTGTTAGACAGTCATCCAGCCGAGCTCAGTCCAGTCCGGTTGTCAGCACTGAGAGACGAGTGCATTGGACACAGTGGCCCCTGGCCTGTTTGCTCACTGGACTGAGCAAGGCTGTCTGGCCCTGATCTGCAGCAGCAGTGGGGAGGAAGAGCGTCCAGAGAAGTGTGTTCTCATTCCCGCTGTAGTCCGGGCTGATTGGTCAGGGCCGGGAGCAGCTCTGCTGTTGGCTGAGGAGTGGGCCCTGAGGACAGAGCATTACTGTATAGCCTGACTGCTGCGGGGGGCGAGCGCCAGCACAGTGGAGCACCGAGGAGTGCTGCACAGAGTGAtggagtctgtctgtctgtctgtctgtctctgtcctgctGCGAAGGAGGGAGTGTTGCAGGGACCAGGCCCTCCCCTTGTCTCCCCGCTGTCACTGCTACACACTCCCCATCTTCAACATCTGGCATCACAGCTGGAAACCGCAGAACTGCACTTGGAACAGACTGGAAGAGCAGAACAGCTGAGTCTGGCAGGGCCGTGGTGTCGTAAACacggaggaacggagaaaaaaCTGAAGGAGAACAAATTtatgttaaaaagcaaaatgagTTCAAAGTTCTCTCCTGGTCCCCCTGGATGAAGATGGATGAGGACTgggggggacactgctgctgaaCTCAGAGCTGAACAGCCTGACTGTGAAACTGAAGGAATAGTCCTGCTGTACTGGGGGGGTTGTGGGGAGCATCTGCTGTTActttgaagaaagtgtttagatgatttattttcttatttatttttggttttgagcATTCGTTCGTGGTGTTTGATATGTAAATAGTTGTTCTAcagataccaaaaaaaaagaattgaaaCATGAAGAAATACAGAGCAGACTCTGCGTGGGAGGGGAGGGGTCCCGTTTCCCCTCTTCTCTGGACCCCCGGCCTGCTGAACCGCCTGCTGATGGCCTACAGTAGGCTCTGActcctcttttctctttttttttttgataaataCATTGAGAAGTCGCAGAGAGGGCTGTGGCATTGCACGCgttttatttggaaataaacAGGTTTGTTAGTGAGTTTTAAA

Function

GO: NA

KEGG:

id description
K04699 SOCS6_7; suppressor of cytokine signaling 6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18082 lncRNA upstream 186856 25933951 ~ 25935581 (+) True G14556
TU18012 lncRNA upstream 444088 25672259 ~ 25678349 (+) True G14510
TU18004 lncRNA upstream 510748 25604639 ~ 25611689 (+) True G14502
TU17932 lncRNA upstream 699411 25422443 ~ 25423026 (+) True G14455
TU17917 lncRNA upstream 756061 25363896 ~ 25366376 (+) True G14448
TU18169 lncRNA downstream 30855 26165630 ~ 26165982 (+) True G14623
TU18247 lncRNA downstream 78519 26213294 ~ 26215317 (+) True G14695
TU18260 lncRNA downstream 99551 26234326 ~ 26304342 (+) True G14703
TU18261 lncRNA downstream 104395 26239170 ~ 26241244 (+) True G14704
TU18322 lncRNA downstream 245276 26380051 ~ 26382420 (+) True G14755
AMCG00016613 mRNA upstream 19724 26099372 ~ 26102713 (+) True AMCG00016613
AMCG00016612 mRNA upstream 26429 26086899 ~ 26096008 (+) True AMCG00016612
AMCG00016608 mRNA upstream 39173 26056769 ~ 26083264 (+) True AMCG00016608
AMCG00016609 mRNA upstream 103516 25982957 ~ 26018921 (+) True AMCG00016609
AMCG00016602 mRNA upstream 148666 25961546 ~ 25973771 (+) True AMCG00016602
AMCG00016610 mRNA downstream 3001 26137776 ~ 26146976 (+) True AMCG00016610
AMCG00016621 mRNA downstream 46624 26181399 ~ 26184860 (+) True AMCG00016621
AMCG00016618 mRNA downstream 59646 26194421 ~ 26198373 (+) True AMCG00016618
AMCG00016622 mRNA downstream 64714 26199489 ~ 26212158 (+) True AMCG00016622
AMCG00016620 mRNA downstream 98339 26233114 ~ 26237577 (+) True AMCG00016620
TU18062 other upstream 172261 25940528 ~ 25950176 (+) True AMCG00016607
TU18064 other upstream 172261 25940528 ~ 25950176 (+) False AMCG00016607
TU18026 other upstream 381879 25725848 ~ 25740558 (+) False AMCG00016598
TU17920 other upstream 730597 25370296 ~ 25391840 (+) False AMCG00016584
TU17811 other upstream 964976 25150483 ~ 25157461 (+) True AMCG00016566
TU18257 other downstream 151088 26285863 ~ 26289222 (+) False AMCG00016625
TU18348 other downstream 292564 26427339 ~ 26432356 (+) True AMCG00016633
TU18353 other downstream 293948 26428723 ~ 26429327 (+) False AMCG00016633
TU18379 other downstream 470751 26605526 ~ 26657425 (+) False AMCG00016635
TU18699 other downstream 1411219 27545994 ~ 27547609 (+) False AMCG00016683

Expression Profile