RNA id: AMCG00016614


Basic Information

Item Value
RNA id AMCG00016614
length 5145
RNA type mRNA
GC content 0.63
exon number 11
gene id AMCG00016614
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26104916 ~ 26117450 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGGGGCCGTGATGGAGCTGATGTTGCTCCAGCTGCTCCTGCTCTCTGTGCCTCCGGGCTCTGGCTCCAGCAGCTTTCTGTACCAAAAGGCAGAGTCTACCATCAGACCGGGAACTGGTGGCCCCACAGGTACAACCTTGACCACAGGGCCCCCCGGCAGCACCTGGCCAGAGACTCAGGGTCCCACTGTCAGTAGCACACCCCCCAGCTCACCCCCACCCTCTCCCAGCCTGGCCACTACAGAGCTGCCTGCAGACCCAGCCCAGGGGGGGGCAGACAGCTGGGAGGTGGTGGAGGCGTTCCTGTACAGCGGTGATGCGGAGCACCTGGCCCAGGCCAACTGCACCCAGCAGTACCGCCTGCAGGGTGTGCAGGGAGCAGCCGGACCCAGCCTGCAGCCCTTCCTGCTCAGTGCCCTGGACACACTGACTCACGCCGCCAACTTCCTCAACATGGTCTTCCAGGCCAACGACATCCGCGAGGCCAGTGTGCGGGAGGACATCGAGTGGTACCATGCGCTGGTGCGCAGCCTGCTGGAGGGCGACCCTAAGATCCAGCGCGCCGTGCTGACGTTTGATGCACAGCCCACATCCCCGCGGCCCCAGCTGGTCCTGCAGGCGTCACGTGCTCCAGGCCCAGCAGACATCCTGCTGGAGGACCTGTCCACGGCCTGGGAACGGCTGCACATGCTGGCCAATGGCTCTGACTGGTTCACTGCACTAAAGTTCCCTGAGGGCCGCCCCTTGGCCACCCTGCACAAGCGCACCCTGCGCAACGACCTGCGCACGCTGGACACACCCAAGTGGAGCCGTGGTGACAGCTATGTACTGGACCAGCGTCACGTGCACTGGGCCGATGCCCCCTTCCTGGACTGCCGGGCCGGCCGCTTCCTTCCGGGCTGGCTGGTCTCACTGTCCACCTCTTTCTATGGCCTGAAGCCCGACCTCAGCCCTGAGTTCAGCCTGCAGAGCCTGGATATAGACCAGTGCGCAACGGGAGAGGACTGGTTCTCCAACACACACCTGTGCAACCGCACCAGCATGAAGTGTGAACCGCTGACTGGTCAGGGTTTCCGGCTGGGTCAGTACCAGTGCCGCTGTAAGGAGGGGTTCTACAGCCCCCCCAATGCTGCAGgaggaGAGGAGCCGTCCAGGCGCAGTGCCAGTGGAGAGTGGGGCCCGCGTGTGCCTGTATGTCTGCCCTGCTGGCCAGGCTGCCAGCACTGTTTGGACAGCACCCCCTGCAGTGTGCAGCAGGACTGGCGTGTGCGCGCGGCCGTGCTGGCGGTACAGGCCTTCTTCATGCTGCTTGTCTTCATCAGCATGCTGGTGGCCTACAGGTTCCGCCGCAGCAAGaggATCCGTGCCTCAGGCTTGCTGCTACTGGAGACCATCCTGTTTGGCTCTCTGCTTCTCTACTTCCCTGGCATTGAGCTCTCTGTCGCCCCCCTGCAGGTGTTTATCTTATACTTCAAGCCCAGCACCTTCCGCTGCATCCTGCTGCGCTGGGTCCGCCTGCTGGGCTTCGCCATCGTGTACGGCACCGTGACCCTGAAGATGTACAGGGTCTTGCGGGTATTTGTGTCGCGCACTGCCCAGCGCGTGCCCTACATGTCCAGCACACGGGTGCTGCGGATGCTGGGCGTCATCGTGCTGACAGTCAGCTGGTTCCTGTCAGCCTGGACGGCCGGCGCGCTGCAGAACATGGACCGTAACGTGCCCATGCTGGTGACCTCGCAAACCCGTGAGGGGCTGGACTTCAGCCTTTGTGACCTTGACCGCTGGGACTACATGATGGCTGTGGctgAGCTGCTGTTCCTGTGCTGGGGCAGCGTGCTGTGCCACGCGGTGCGCACAGTGCCCTCTGCCTTCCACGAGCCGCGGTACATGGGCATTGCCATCCATAATGAGATGCTGCTGTCTGCCGCCTTCCACCTGCTACGCCGGCCACTGCGGGAGGAGATTGCAGCGGAGGTGTATGAGGACGAGCTGGACCTACGGCGCTCCGGCTCCTACCTGAACAGCAGCATCACCTCGGCCTGGAGCGAGCACAGCCTGGATCCTGACGATATCCGGGACGAGCTAAAGAAGCTGTATGCCCAGCTGGAGGTCCACAAGACCAAGAAGATGACAGCCAACAACCCACACCTGCAGAAGAAGCGCAGCTCCCGCCGGGGCCTGGGCCGTTCCATCATGAAGCGCATCACTGAGATCCCGGAGTCCATGAGCCGGCAGTGCAGCCGTGAGGACAAGGAGGGCGCCGGGGGGACAGGCAGCCAGACGGGCTCCTGCAAGAAGAAGGCGGGGGAGTCGGGGGGCTCCAGCACACGGACGAAGGAGGACTCCCTGAAGCAGCGTGTACTGTCTCTACGCAAGTCACACAGCACCTATGACCACGTCCGCGACCAACGTGACCACCACCCACGCTCGTGTGAGACCAAGGACTCCTCGCTCCTGGACTCGCTGATGAGGAGGAAGATGGCCAAGAAGGCGTCGGAGCGCTCTGACTGCGAGTCTGTGGATGCTGCGCCGCTCGTCTGCAAGTCGGCAAGTGCCCACAACCTGACTGACAAGCGGCCGCTGCAGCCCCGGGCCAGCAGGCTACAGAAGTCCATGAGTGTCATGGCCGGCCCCCCGGACACGGCCCACCTGCTCCCCAGCAAGGCCTGCAGCCTGGAGGACACCTCACAGGCTGGGGGGGGCAGCCATCAGGGTCGGAGCCTGTTGGATTCACTTGAGGCCACGCTGCTGCTCCGCACTGATGGGGAGCCGCCCCGCGGGCTGAACGCATTGCTCGACCAGGACTTCAACAGGGCAGAGGTCTGCCCCTGGGAGGCGGAGGCCCAGCTGCCCGAGAGTAAATCCCAGAAGCATGTCACCTACGCCTTCAATAGCAATGGAGAGATGGGCAGCCACAGCCTACAGCACAGCCACACCCAGCCAGAGGACGGCACTCTCAGGGTGGAGGAGCTGCCCGGCAGGGGTTGTATGAAAGCTGACCTGGAGGCCCCAGGAGGAGGCAGCCAGGCCGGAGAAACCTGCTCATGGGATTCAGAGACGGACGAGGTGAAGGCCAAGGTCCCAGTATCCTCCAGCGCCCCAGGGTCTCCAGTCAGTGGCCTGGTGAGAGCCAAAGGCTTCTCATATAAAGGGCCTCCCCGGGGATTTGGACTCTCCATGAAAGGCCTGGTGGGGTCAGGGAAAGGCAGCTTGAAGATAAAGGGGAAGAAGGGTTCAgacaagaagaaggagaaaaaggagGAAGCAGGAAAGAGCAAGGGGAAGGGAGCAGCTTCCCAGGCAGCCCCCTGTGCAGAGCCTCCGGTTGAGAAACACAAGGAGGGGTCTCCCACTAGTGGAGAGAGTGGTGCGGCGCTAAAGACAGACAGCGAAGCTGCAACAGGAAGCCCAAAGTCAGAGGTGTGTCCACAGGGTGCAGAGGAGGCCCGAGAGCCTGCAGCCAGCGCTGAGAAATGTGCCACCCAGGCAGACCACAGGATGACCAGGCAGGAGAGCTCAGTTGCCATCGTCTGCCCCTGGGAGGTCGAGGGAGTGAAGCCAGGTGTCCAGAGACAGGCCAGTGTGGTGTGCCCCTGGGAGGGAGTAGAGCCACCACAGAAGACCACAAAGCGGCGGGACAGCACGCTGACAGACGTTTCCCCCCGGGATACTGAGACTGTGTCCTGCCCCCTCCCACAGCCACCAGTCACGGCCTCAGAGAAGGCAACAAAGAGACGTGACAGCACGCTGGCAGACGTCTGTCCCTGGGAGGCCGAGGGAGAGAAGCCAGGTGTCCGGAGACGGTCCAGTGTGGTGTGCCCCTGGGAGGGAGTGGAGCCGCCACAGAAGACCTCTAAGCAGGAGGACAGCACACTGGAGGACGTCTGTCCCTGGGAGACTGAGACACACCCTCGCCCCCTTCCAGAGCCACCAGTCACGGCCTCAGAGCAGTCAACAAATAGACAGGACAGCACGCTAGCGGACGTCTGTCCCTGGGAGGCCGAGGGAGAGAAGCCAGGTGTCCGGAGACGGTCCAGTGTGGTGTGCCCCTGGGAGGGAGTGGAGCCGCCACAGAAGACCTCTAAGCAGCAAGACAGCACACTGGAGGACGTCTGTCCCAGGGAGACTGAGACACACCCTTGCCCCCTTCCAGAGCCACCAGTCATGGCCTCAGAGCAGTCAACAAATAGACGGGACAGCACGCTAGCGGACGACAGCACACTGGAGGACGTCTGTCCCTGGGAGGCTGAGGGGGAGAAGCCCGGTGTCCGGAGACGGTCCAGTGTGGTGTGCCCCTGGGAGGGAGTGGAGCCGCCACAGAAGACCTCTAAGCAGCAGGACAGCACACTGGAGGACGTCTGTCCCTGGGAGACTGAGACACACCCTCGCCCCCTTCCAGAGCCACCAGTCACGGCCTCAGAACAGTCAACAAATAGACGGGACAGCACGCTAGCGGACGTCTGTCCCTGGGAGGCTGAGGACACACCTGCCAAGCACTCAGAAATGGTGTGTCCCCGGCCGGCTGAGGGAAAGAAGCCAGGTGTCCAGAGACAGGCCAGTGTGGTGTGCCCCTGGGAGGGTGTGGAGCCACCACAGAAGAGCACTAAGCGGAGGAACAGCACCCTTGCAGATGTCTGTCCCTGGAAGGTGCCGGAGGCCCGCCCCAGCCCAGCCCACAGCACCACTGCCGAGGTCTGTCCGTGGGAAGCCCCTGAGCCAGCGGGTGGGACGCTGCCCCAGCAGAGTGAGCTGGCAGACGTGTGTCCCTGGAAAACGCAGGAGGCAGAGAGGCCCACCGACTTGCACAGCACGTTTGCTAAGCCCAGCCCTGGTGGCGCTACAGTCACAGAGGCCACCCCCACGACCCAACAAGACAGCAAGGCGGCAGGTACCAGCTCAGTCACGGGGCAGCCGGCcctcagagacagagagactgacCTCGCTCTGGCCCGCAGGGACGCACTGTGCCCCTGGGAGGTGGAGAAGCTCAGAGCTCCGCCAGAGACAGATGACAGCTCTTCAGACATCCTGCCCTGGGAGGCGGAGgcggaggagcagagcgatgaCCCCGAGAGAGACGCGGAGGGATGCCCCTTCCTGTACGAGCCGGACATGGACACTGAGCCCACCACTCAGAAGTAA

Function

GO: NA

KEGG:

id description
K08469 GPR158; G protein-coupled receptor 158

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18197 lncRNA downstream 5944 26097728 ~ 26098972 (-) True G14650
TU18115 lncRNA downstream 82653 25971786 ~ 26022263 (-) True G14585
TU18117 lncRNA downstream 125353 25973534 ~ 25979563 (-) True G14587
TU18107 lncRNA downstream 183368 25918030 ~ 25921548 (-) True G14578
TU18019 lncRNA downstream 429716 25672304 ~ 25675200 (-) True G14517
TU18219 lncRNA upstream 30855 26148305 ~ 26149084 (-) False AMCG00016617
TU18227 lncRNA upstream 64294 26181744 ~ 26184778 (-) False G14676
TU18228 lncRNA upstream 64294 26181744 ~ 26184778 (-) False G14676
TU18283 lncRNA upstream 157727 26275177 ~ 26303459 (-) True G14723
TU18337 lncRNA upstream 277482 26394932 ~ 26395425 (-) True G14765
AMCG00016601 mRNA downstream 279070 25824746 ~ 25825846 (-) True AMCG00016601
AMCG00016599 mRNA downstream 378369 25706081 ~ 25726547 (-) True AMCG00016599
AMCG00016600 mRNA downstream 401589 25676569 ~ 25703327 (-) True AMCG00016600
AMCG00016597 mRNA downstream 462583 25611563 ~ 25642333 (-) True AMCG00016597
AMCG00016594 mRNA downstream 621206 25449909 ~ 25483710 (-) True AMCG00016594
AMCG00016617 mRNA upstream 30060 26147510 ~ 26149543 (-) True AMCG00016617
AMCG00016615 mRNA upstream 34161 26151611 ~ 26155450 (-) True AMCG00016615
AMCG00016616 mRNA upstream 41576 26159026 ~ 26159922 (-) False AMCG00016616
AMCG00016624 mRNA upstream 94936 26212386 ~ 26215060 (-) True AMCG00016624
AMCG00016623 mRNA upstream 121632 26239082 ~ 26241390 (-) True AMCG00016623
TU18183 other downstream 21749 26081503 ~ 26083167 (-) True G14637
TU18038 other downstream 350444 25752995 ~ 25754472 (-) True G14534
TU17858 other downstream 827438 25273664 ~ 25277478 (-) False AMCG00016579
TU17849 other downstream 1021217 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 1089573 25012364 ~ 25015343 (-) False AMCG00016562
TU18222 other upstream 39071 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 64294 26181744 ~ 26184778 (-) False G14676
TU18226 other upstream 64294 26181744 ~ 26184778 (-) True G14676
TU18278 other upstream 121632 26239082 ~ 26241106 (-) False AMCG00016623
TU18405 other upstream 309889 26427339 ~ 26518279 (-) False G14816

Expression Profile