RNA id: AMCG00016615


Basic Information

Item Value
RNA id AMCG00016615
length 1490
RNA type mRNA
GC content 0.67
exon number 10
gene id AMCG00016615
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26151611 ~ 26155450 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCAGCTGATAGGAGTCAGTGCGGGCGctgtgagagagggaggctgcTGCTCTGCACTGAAGTCAGCCATAGCCGAGCTCCGGCAATCCGCACACCCCCACGGACACAGACCCGCTGGTGCTCTGAACATCTCTCCCGGGATGGACGACCCACTCTCTGCCCCCTGCGACCCGGCACCGCCAGCCCCCCGCTCCTGCGACTGCTTCGTGGCGCTGCCCCCCGGCTCGCTGGCCGACCAGGTCGTGTTCGGGAAGAACTCGGACCGGCCCCGGGATGAGGTGCAGGAGGTGGTGTACTTCCCCGCTGCCACCTACCCCCCGGGGTCAGAGGTGAAGTGCACCTACATCGAGATTCCGCAGGCTGAGCGCACCCTGGCCGTGGTGCTGAGTCGGCCAGCCTGGCTGTGGGGCGCGGAGATGGAGCTGCTGGAACAACACGGCCAGGGAGGGGCCTGCACCCAGGGGCCCCCGCACCTCAGCTACCACAACACCTTCCTGCTGGCCGACCGCACAGAAGCCTGGGTGCTGGAGACCGCGGGGCGGCTGTGGGCAGCACAAAGGGTCACTgCCGGAGTGAAGAACATCTCGAACCAGCTGTGCATCGGGACGCAGCTGGACGCGGAGCACGTGGGCCTGAGGGAGGAGGCGCAGGCGCGGGGCTGGTGGGACGGCGAGGGGGAGTTCAGCTTCAATGTCGCTTTCTCCCACGAAAACCCCCCCGCCCGCATGGAGGCAGCCAAGAAGAGATACCGCGGAGGAACGGAGCTGCTGCGACAGCACGACGGCTCTGTGTCAGCGGAAGTGCTCATGCAGATCCTGCGGGACCGGCCCAGTGGCATCTGTATGGACTCGGGAGGGTTCCGCACCCAGGCCAGCATGGTGTCCATCCTGCCGCGCGACCCCAGCCTGCCCTGCGTCCACTTCCTCACAGCCACGCCCGACCCCTCCAGGTCTGTGTTCAAGCCCTTTGTGTTTGCGGAGGCGGTGACCCCTGCCCCCCACACAGTCTCCCCACAGGGGGGCGCTGAACATGTGGACAGGCAGCACGAGCTGTACCGAGCGCACCAGGACGCCCTGAGCGCCATGGAGAGGGACCCGtgtcTCAGTGACATCACGGCACTGCTGCAGGAGGGCGTGGCGCGGGGGGGCGGGGAGCTGGGAGACCTTTTCTTCGACTGCGTGGACACGGAGATGAAGTTCTACCTCCAAGTACCCCCTGGAGGAGAGGTACAGACAGAGCAGGCCCGGGACACTGACACCAGactgccctgccctgcctccCCCCCTGAAGCGCCACAGCCTCTGGAACTAACAAGGCAACACGAGCTGAGAGGAGAGAAGCGACGCAGAGTAGTGTGGTCAGAGCCCAGCCCAGCACTGCTGCCCAGCCGGGCCAAGGTCGCCGGTCAGGGGGGTCCATCTTCAGTGACTGCCTGCCTGACTGGCCACCTGCGCCTCAGTgccgagggagggaggggtcaGTCACAGTAA

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:0051188 obsolete cofactor biosynthetic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0017144 drug metabolic process biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18219 lncRNA downstream 2527 26148305 ~ 26149084 (-) False AMCG00016617
TU18197 lncRNA downstream 52639 26097728 ~ 26098972 (-) True G14650
TU18115 lncRNA downstream 129348 25971786 ~ 26022263 (-) True G14585
TU18117 lncRNA downstream 172048 25973534 ~ 25979563 (-) True G14587
TU18107 lncRNA downstream 230063 25918030 ~ 25921548 (-) True G14578
TU18227 lncRNA upstream 26294 26181744 ~ 26184778 (-) False G14676
TU18228 lncRNA upstream 26294 26181744 ~ 26184778 (-) False G14676
TU18283 lncRNA upstream 119727 26275177 ~ 26303459 (-) True G14723
TU18337 lncRNA upstream 239482 26394932 ~ 26395425 (-) True G14765
TU18347 lncRNA upstream 269582 26425032 ~ 26425250 (-) True G14775
AMCG00016617 mRNA downstream 2068 26147510 ~ 26149543 (-) True AMCG00016617
AMCG00016614 mRNA downstream 34161 26104916 ~ 26117450 (-) True AMCG00016614
AMCG00016601 mRNA downstream 325765 25824746 ~ 25825846 (-) True AMCG00016601
AMCG00016599 mRNA downstream 425064 25706081 ~ 25726547 (-) True AMCG00016599
AMCG00016600 mRNA downstream 448284 25676569 ~ 25703327 (-) True AMCG00016600
AMCG00016616 mRNA upstream 3576 26159026 ~ 26159922 (-) False AMCG00016616
AMCG00016624 mRNA upstream 56936 26212386 ~ 26215060 (-) True AMCG00016624
AMCG00016623 mRNA upstream 83632 26239082 ~ 26241390 (-) True AMCG00016623
AMCG00016629 mRNA upstream 149465 26304915 ~ 26309363 (-) True AMCG00016629
AMCG00016628 mRNA upstream 184043 26339493 ~ 26343614 (-) True AMCG00016628
TU18183 other downstream 68444 26081503 ~ 26083167 (-) True G14637
TU18038 other downstream 397139 25752995 ~ 25754472 (-) True G14534
TU17858 other downstream 874133 25273664 ~ 25277478 (-) False AMCG00016579
TU17849 other downstream 1067912 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 1136268 25012364 ~ 25015343 (-) False AMCG00016562
TU18222 other upstream 1071 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 26294 26181744 ~ 26184778 (-) False G14676
TU18226 other upstream 26294 26181744 ~ 26184778 (-) True G14676
TU18278 other upstream 83632 26239082 ~ 26241106 (-) False AMCG00016623
TU18405 other upstream 271889 26427339 ~ 26518279 (-) False G14816

Expression Profile