RNA id: TU18219


Basic Information

Item Value
RNA id TU18219
length 390
lncRNA type sense_over
GC content 0.60
exon number 4
gene id AMCG00016617
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26147510 ~ 26149543 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agGTTCCTCACCCTTGCTGGGAACAGAATCTCCCGGATCGAGGGCCTGCAGGGTCTGAAGAAGCTGGGCTTTCTGGACCTGTCTGACAACCTTATTGAGCAGCTGGACCTGGATGGTCTGCCGCAGAGCCTGCTGCTGTTGAGCCTCCGAAGGAACCCCTGTGCGGAGCGGAAAGAGTACCGggCCAGTGTGGCTGCAGCTCTGCCACACCTGAGGGAGCTGGATGGACAGATGATCgcaggagagacagacagcaatGAGGACAGTGGGGGCTCAGAGggggaggaacaggaggaggaTGTCTACTACCATGACAAGCTCTGGTCACTGGATGGCATAAAGGGGCTGTTCGGGGAGCTGCGGACGGAGTGGCGAGGACGGACAGAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18197 lncRNA downstream 49333 26097728 ~ 26098972 (-) True G14650
TU18115 lncRNA downstream 126042 25971786 ~ 26022263 (-) True G14585
TU18117 lncRNA downstream 168742 25973534 ~ 25979563 (-) True G14587
TU18107 lncRNA downstream 226757 25918030 ~ 25921548 (-) True G14578
TU18019 lncRNA downstream 473105 25672304 ~ 25675200 (-) True G14517
TU18227 lncRNA upstream 32660 26181744 ~ 26184778 (-) False G14676
TU18228 lncRNA upstream 32660 26181744 ~ 26184778 (-) False G14676
TU18283 lncRNA upstream 126093 26275177 ~ 26303459 (-) True G14723
TU18337 lncRNA upstream 245848 26394932 ~ 26395425 (-) True G14765
TU18347 lncRNA upstream 275948 26425032 ~ 26425250 (-) True G14775
AMCG00016614 mRNA downstream 30855 26104916 ~ 26117450 (-) True AMCG00016614
AMCG00016601 mRNA downstream 322459 25824746 ~ 25825846 (-) True AMCG00016601
AMCG00016599 mRNA downstream 421758 25706081 ~ 25726547 (-) True AMCG00016599
AMCG00016600 mRNA downstream 444978 25676569 ~ 25703327 (-) True AMCG00016600
AMCG00016597 mRNA downstream 505972 25611563 ~ 25642333 (-) True AMCG00016597
AMCG00016615 mRNA upstream 2527 26151611 ~ 26155450 (-) True AMCG00016615
AMCG00016616 mRNA upstream 9942 26159026 ~ 26159922 (-) False AMCG00016616
AMCG00016624 mRNA upstream 63302 26212386 ~ 26215060 (-) True AMCG00016624
AMCG00016623 mRNA upstream 89998 26239082 ~ 26241390 (-) True AMCG00016623
AMCG00016629 mRNA upstream 155831 26304915 ~ 26309363 (-) True AMCG00016629
TU18183 other downstream 65138 26081503 ~ 26083167 (-) True G14637
TU18038 other downstream 393833 25752995 ~ 25754472 (-) True G14534
TU17858 other downstream 870827 25273664 ~ 25277478 (-) False AMCG00016579
TU17849 other downstream 1064606 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 1132962 25012364 ~ 25015343 (-) False AMCG00016562
TU18222 other upstream 7437 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 32660 26181744 ~ 26184778 (-) False G14676
TU18226 other upstream 32660 26181744 ~ 26184778 (-) True G14676
TU18278 other upstream 89998 26239082 ~ 26241106 (-) False AMCG00016623
TU18405 other upstream 278255 26427339 ~ 26518279 (-) False G14816

Expression Profile