RNA id: AMCG00016618


Basic Information

Item Value
RNA id AMCG00016618
length 2060
RNA type mRNA
GC content 0.57
exon number 10
gene id AMCG00016618
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26194421 ~ 26198373 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAACTAAGCTCCATCCCCTCCCTGTGCGGCCGGCTCTACGTCACAGATGTATGGTCGCGTCAGTGTAGCTgttctgcgctgctccgccaatggaACGCGTTCCAGAACACGGCGCTGATATCTATGGTCCTCGCAGCCGTGCAGCGTGACGACGCGGTGACGCATTTGTCTTCCGCCTGAGAGGAAGAACAGGAAAACAACAGAACTAGAAGAGAAACGGAGCGAAAGTTGCGGATTATAGTGTTTCTCCGGTCCCGAGAACCGTCGTTGTGTCAGGATGGGAGGAGGAGACCTGGCAGAGCAGCGCCATGAGGCCGAGGTGCGCAAGATTGAGGAGCTTCAGAAAGAGCTGCGGGAGGAGCGAGCCCGGGAGGAGATCCAGAGATACGCCCAGGAGACCGGCGCCGTCAAGAAAAAAGATGACCGCCTGGACTGGATGTACCAGGGCCCGGGCGGCCAGGTGTCCCGGGACGAGTACCTGCTTGGCCGGCCCATCGACCGCCAGATCACCCAGCAGTACGAGGAGCCAGAGGCCGGCCCCTCCACCCAGACTGGCCTGCTGCCCGGCTCCATCTTCaatgccccccccaccactgccAACATGCTGGACATCGCTGCCAAGATCCGAGAGGACCCGCTATTCCTCATCCGAAAAcgggaggaggagaagaagagggagGTGCTGACCAACCCTGTGAAGATGAAGAAGATCAAAGCCATGCTGCAGCAGAACCTGGACAtgaaggggaaggagaaaaagaaaaagaagaaagacaagaaggacaagaaagagaaggaaaagaagaagcGTAGGAAGGAGCGGCGGCGGAAGCACAGCTCCAGTGAGGACGAGTCCAGCAGCGCTGAGGAGCAGCGGCCTCGGTCTGAACGAAGAGCTGCCAGCCCCTCTCTTCATGCCTCGCTTGCCCGTTTGGCTGGGTATGGGCTGCAGCTCCCGTCAAATGGCAGCCGTGCGCATGCAGTGTCTCCTCCCGTGCAGCAGGGGGCAGCAGGCCTGGCCAGGGGGAGGTCACGCAGCCGCTCCTGTTCACCACACAAGAACTCGGGCCACAGCAGCCGGCAGGAGAAGGGGAAGAGGGGAGCATCTCCCCCCGCACACAGTAAAcaTGCCCACAGTGACAGCAGGGCGGTGCGCAGAGGCCGGAGCCCATCACCCCCCAAGGAGCGCACTCACAAACGGCACAACGGCAGCCACACCAAGCGTCTGTCTGCGGAGGAGCTGGAGCGCCGGCGGAAGGAGATGATGGATTTCGCCCGCTGGAGAGATGAAGACCGGGCGGGCAACGTGCAGCGCTACCAGCAGGAGGAGGAGCGTGAGCGCAAGCGCGAGGCCCAGACTGGCCACGGCCAGGCCGGCAAGTTCATCCAtgacATGAAGCTGGAGAGTGCTTCCACCTCCTCTCTGGAGGACAGAGTGAAGAGGAACATCCACTCCTTACAGAGGACCCCCGCTGCTCTTGAGAAGAACTTCATgaggagatagagagagggaatgGGGGGCTGATGGAGAAAGAAACCAGCAAactgggagagaaagagatgtttcatatatatagCGCCTTTTCATGGTGATCCCTGTCTGTAGTTTAGTTTAGAGAAATTGGCGAGTACAATGACTGTGGCTGCAGGAACAGGCTGCTGTTTATCAGCCATTGTGATTCATCTGTTGATCAATGGATTGATTGCTTCTGGAGAGCTGCTCTGCCCCCCacccagagagggagagatctGTTCCTGTcctcctgagctgttcagcgCTTCGAAACCACAGACCTCCTTTAACTCCCATGGCATCAGGCCCCCCACCTACACAGCCCCCGCCTCCATCCCTTCTTCCAGTCTGCTCGGGGTGAATCTGCTCCAGTCAGACCCCTCTCCAGCCTGGACAATGCCTTTCTGTCCTGTTAAAAGGGGGCTCTGATGTCACTGTCTTTTTCTACAAATCTGCAGGAAAACTGTCCTCTTACAGACTTTGAACACCAGCAATCAAGTCTCTGACTTactatgtgtatatttgtacaggttttttttttttatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18169 lncRNA upstream 28439 26165630 ~ 26165982 (+) True G14623
TU18082 lncRNA upstream 258840 25933951 ~ 25935581 (+) True G14556
TU18012 lncRNA upstream 516072 25672259 ~ 25678349 (+) True G14510
TU18004 lncRNA upstream 582732 25604639 ~ 25611689 (+) True G14502
TU17932 lncRNA upstream 771395 25422443 ~ 25423026 (+) True G14455
TU18247 lncRNA downstream 14921 26213294 ~ 26215317 (+) True G14695
TU18260 lncRNA downstream 35953 26234326 ~ 26304342 (+) True G14703
TU18261 lncRNA downstream 40797 26239170 ~ 26241244 (+) True G14704
TU18322 lncRNA downstream 181678 26380051 ~ 26382420 (+) True G14755
TU18340 lncRNA downstream 199276 26397649 ~ 26397927 (+) True G14768
AMCG00016621 mRNA upstream 9561 26181399 ~ 26184860 (+) True AMCG00016621
AMCG00016610 mRNA upstream 47445 26137776 ~ 26146976 (+) True AMCG00016610
AMCG00016611 mRNA upstream 59646 26122437 ~ 26134775 (+) True AMCG00016611
AMCG00016613 mRNA upstream 91708 26099372 ~ 26102713 (+) True AMCG00016613
AMCG00016612 mRNA upstream 98413 26086899 ~ 26096008 (+) True AMCG00016612
AMCG00016622 mRNA downstream 1116 26199489 ~ 26212158 (+) True AMCG00016622
AMCG00016620 mRNA downstream 34741 26233114 ~ 26237577 (+) True AMCG00016620
AMCG00016619 mRNA downstream 63359 26261732 ~ 26264293 (+) True AMCG00016619
AMCG00016625 mRNA downstream 87429 26285802 ~ 26302514 (+) True AMCG00016625
AMCG00016626 mRNA downstream 157232 26355605 ~ 26371140 (+) True AMCG00016626
TU18062 other upstream 244245 25940528 ~ 25950176 (+) True AMCG00016607
TU18064 other upstream 244245 25940528 ~ 25950176 (+) False AMCG00016607
TU18026 other upstream 453863 25725848 ~ 25740558 (+) False AMCG00016598
TU17920 other upstream 802581 25370296 ~ 25391840 (+) False AMCG00016584
TU17811 other upstream 1036960 25150483 ~ 25157461 (+) True AMCG00016566
TU18257 other downstream 87490 26285863 ~ 26289222 (+) False AMCG00016625
TU18348 other downstream 228966 26427339 ~ 26432356 (+) True AMCG00016633
TU18353 other downstream 230350 26428723 ~ 26429327 (+) False AMCG00016633
TU18379 other downstream 407153 26605526 ~ 26657425 (+) False AMCG00016635
TU18699 other downstream 1347621 27545994 ~ 27547609 (+) False AMCG00016683

Expression Profile