RNA id: AMCG00016619


Basic Information

Item Value
RNA id AMCG00016619
length 2382
RNA type mRNA
GC content 0.59
exon number 2
gene id AMCG00016619
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26261732 ~ 26264293 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAATACGACTGCGAGCTGCGGGACGGCGCGTGCCAGACTGGGCATCAGGAGATCGAGGGGGTCAGCATGGGGTACCTGCGTGTGGAGGGCAGGAAGATGTTCGCCCTGGCGCAGGTTTTCAGCGCCTTGTTCCGCGACATCCCCAGGACCACGATCATGAAGAGGATGGAAGTTTTAAACATACGAAGCCGGCGCTGCGACATCAAGGAGCTGCGGACCCTGAAAGCCATGCAGTCGGTGCCGGGGCGAGCCGTCAAGTGCTCCCTCATCGCCAAAGAGGACCTGGACGCGCTGTGCCTCGCCTGCCAAGCCCTGAGCCCAAagaaaaggaggaagaggagaaagtGCAGGAAATCCGAGCCGGCGTTAGCTCTGTCCCCAGACGTGATCTGCAGCAACGtttgcaaaaacacaatttctacTTCTCGTGCACTTACCAAAGAGTCTGCAGCTTCTGCCACCggcgccgccgccgccgccgctgctgctgttACTGCTGCTGCCGGGCTGACTATCAATCGGGTCGCACAACAGGCGCAGCTGCTGGAGAGGAGACACAGCTCCAAACCGGCTCAACATTCCTCCAAAACGAAGAGCTGCCGGAACAGCCTGCTACCGGGGGTGGTTAGTCCTCAGTCTAGAAACTATGAAAAAGTTGCAAAAGCTGCGAACTGCTACAGTCTGACCGGGGTAACGGGGCTTCTCCCGGCGGGCATCGTGAACAGCTTCCACACGAAGAGTCTTCATTCCGCCATTGCAGTCAATGAATGTAACCAGACCAGCCTCCCCCTGTATCTGAAGAGCAAGAAGTCGTCTTACAGCGGTGCTGTGAGCTGCGGCTTCTCCAACGGGTATGTGAAAAAGCACAACTCTCCTCCTCAGCCAGTGAACAACAGAAACTTGAACTTCGCCCAGAGAAAGGGCAAGCCCGGGGCAGCGGGGAGTAGGAAGAGAGGACGCTGCGCTCAGGGCACCTCCACGGGTTACTCCAGCGACTCTGGATCCAGTGTGGACTTTGAGAAGGACTCCGACTTCGGATCCAGTTACCAGTCTACCTCCAGCGAGTCTTCGGACGAAGATGACAACCTCGACGGCAGGTCAGCGCAGTCCTCCAGCAGTGAGGAAGGCAGCTCCTCCGAGACCGACTCTAGCTCGGCGTGCAGCGGGGACTCAGTGCAGAGCACTCGCTACCGCCAGGCCGCCCTGCCGACTCCCACCTCACGCTTCCCTTCTCACGGCGCCAGGGGCATCAGGAGCCCCAGTTTCGGCTGCTTGGGGGTCGCCACTGTGAAAAACGAGCCGTCCAGCGCAGGGCCTGTCTCTGGAGAGGGGTCTGAGAGGGAAGCAGAGCGTGCAGCGGCGTTGAGAGGACACAGTGCCAGACAGGGGGCCTCCGCAATCTGCCCTGATGGGAGCAGGCAATTTCTACAACAAAAGAGCCCTTCTTTGCATCCCGAGGGAGGCTTTGAGGCAGCTCCTCCACTTCTCAAAAATGGAAACTATTTGCACAAAGGTGCCCCAGACAATGGGCACTCGTTAGGCCTCAGCAACCAAGCACAGAGCCAGCCTGAGGACCTCTCCCAGGAATCTGCCCTTGCAGGATCACCTTTGCGCAGCTGTGAAGCCCCTGCTGTGGCCCCAGGCCTGGGCTGCACGGAGCCAGAGCGCATTAACATCGACAGCGGTCCCCAGGGGGACACAAGGGAGCCGCGCACAGAAAAGTTCGAGAGGCTTATCAGGACGTCGAAGTTGTGGTGCTATGCAAAAGGATTCAACTTCGACAGCAAAAACGGAGGATTTGCCAGTGCTGCCGCCTACAGCGCAGGACCCAGGGCTTCCAAATCCAAACCGGCCAAAAGTCACTTGGCGCACTCTGGAGGCAGCGGCGGATGCCTTTTAAAACGCTGCTCCTCTCCGAGACCCAGAGGCCGCCCAGCCTTGTCAAGCAAAGCTTTAAAAGTCAATGGGTTGGAAAGGAATTTGAAGGGGACCCGGGCTCCCAGAGGCAGCGACGCGGAGAGGTTGCAGAGATGTTCCAAAGAGACTTCGAACAGAGACAGCAACGGGAATATTGGCAGGAAGGGCAGCGCCGCCGGAGGTGCTGTGACCCCCTCTTGCAAGCGCAAAGCCAGCGGCTCCAGTTTGCCCCAGACCCCCGTTAAGAGGTCTTTCTCCCTCCTGGAGAATTTCCCCTGTCCCCCGTCACTGGTGGTGGGCAAGGACGGAGACTTGAGTCCGGCCTACTCACTGTGCTCACAGAAATGCCTCCCTCACAAGCTGGCGCATCCACCTTGTCGAATGTGGCAACTGGGGGGAAGTATTCTCCCAGTGCCCCCCAGCCACAGATTCAGGGGATATAACCTAGATGGGAACGATTAA

Function

GO:

id name namespace
GO:0042471 ear morphogenesis biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0009653 anatomical structure morphogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18261 lncRNA upstream 20488 26239170 ~ 26241244 (+) True G14704
TU18247 lncRNA upstream 46415 26213294 ~ 26215317 (+) True G14695
TU18169 lncRNA upstream 95750 26165630 ~ 26165982 (+) True G14623
TU18082 lncRNA upstream 326151 25933951 ~ 25935581 (+) True G14556
TU18012 lncRNA upstream 583383 25672259 ~ 25678349 (+) True G14510
TU18322 lncRNA downstream 115758 26380051 ~ 26382420 (+) True G14755
TU18340 lncRNA downstream 133356 26397649 ~ 26397927 (+) True G14768
TU18354 lncRNA downstream 177859 26442152 ~ 26445762 (+) True G14781
TU18352 lncRNA downstream 231129 26495422 ~ 26499242 (+) True AMCG00016640
TU18364 lncRNA downstream 263026 26527319 ~ 26548212 (+) True AMCG00016638
AMCG00016620 mRNA upstream 24155 26233114 ~ 26237577 (+) True AMCG00016620
AMCG00016622 mRNA upstream 49574 26199489 ~ 26212158 (+) True AMCG00016622
AMCG00016618 mRNA upstream 63359 26194421 ~ 26198373 (+) True AMCG00016618
AMCG00016621 mRNA upstream 76872 26181399 ~ 26184860 (+) True AMCG00016621
AMCG00016610 mRNA upstream 114756 26137776 ~ 26146976 (+) True AMCG00016610
AMCG00016625 mRNA downstream 21509 26285802 ~ 26302514 (+) True AMCG00016625
AMCG00016626 mRNA downstream 91312 26355605 ~ 26371140 (+) True AMCG00016626
AMCG00016631 mRNA downstream 147192 26411485 ~ 26416977 (+) True AMCG00016631
AMCG00016633 mRNA downstream 164918 26429211 ~ 26433656 (+) False AMCG00016633
AMCG00016632 mRNA downstream 198030 26462323 ~ 26468002 (+) True AMCG00016632
TU18062 other upstream 311556 25940528 ~ 25950176 (+) True AMCG00016607
TU18064 other upstream 311556 25940528 ~ 25950176 (+) False AMCG00016607
TU18026 other upstream 521174 25725848 ~ 25740558 (+) False AMCG00016598
TU17920 other upstream 869892 25370296 ~ 25391840 (+) False AMCG00016584
TU17811 other upstream 1104271 25150483 ~ 25157461 (+) True AMCG00016566
TU18257 other downstream 21570 26285863 ~ 26289222 (+) False AMCG00016625
TU18348 other downstream 163046 26427339 ~ 26432356 (+) True AMCG00016633
TU18353 other downstream 164430 26428723 ~ 26429327 (+) False AMCG00016633
TU18379 other downstream 341233 26605526 ~ 26657425 (+) False AMCG00016635
TU18699 other downstream 1281701 27545994 ~ 27547609 (+) False AMCG00016683

Expression Profile