RNA id: AMCG00016621


Basic Information

Item Value
RNA id AMCG00016621
length 919
RNA type mRNA
GC content 0.50
exon number 5
gene id AMCG00016621
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26181399 ~ 26184860 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTCGTCTCACTGCACTTTATAGTGGCTTTACTACAGTGCAATACCTTACACATTGCATTTTCttcattaacaataatattgtgATTTTGAGTTATCgtgcaacaaaacaatattctgtattttctctccttggcttattatatacaaaatactgtATGCATCTGATTCTATATCTCTTACTTAAATACGTGATGGCCTCGTCATGTGATTAGAGCGCTCCTTACAGTCTTCAAAGGGATTTGTGTGGCGAGGAAGTTCCGGTTCCTCCCCTATCACATGACCAGGGTTGGAGGCAAAACCGCGGAGCGTATATCCCAGCATCCTTTTAGGTCTCTTCCTCTTTCCGTGAACCGACATGTCTAAGAGAGGACGTGGTGGTTCGTCCGGTGCGAAGTTTCGCATCTCACTGGGTCTCCCAGTGGGGGCTGTGATCAACTGCGCTGACAACACAGgtgCAAAGAACCTGTACATCATCTCCGTGAAGGGCATCAAGGGCCGTCTGAACAGGCTGCCGGCGGCAGGTGTGGGGGACATGGTGATGGCCACTGTGAAGAAAGGCAAGCCAGAACTCCGGAAAAAGGTGCATCCTGCGGTAGTGATACGGCAGCGGAAATCCTACCGGAGGAAAGACGGGGTGTTCCTGTACTTCGAAGACAACGCAGGGGTTATAGTCAACAACAAAGGGGAGATGAAAGgctcgGCCATCACGGGTCCTGTGGCTAAGGAGTGTGCGGACCTCTGGCCCAGGATTGCCTCCAATGCGGGCAGCATTGcctgacccccccaccctgccctGTTTGTACAAACCCAATAAAACTGGTTCTGGCCAAAATGTCCTGCTGTCAGTTGCCTCCTTCCTTTGATTGGGAAAGCTGGGTCCAAACTCTCCACTACACCCACTCCCTCCTTCACTCAGTT

Function

GO:

id name namespace
GO:0006610 ribosomal protein import into nucleus biological_process
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0006413 translational initiation biological_process
GO:0006414 translational elongation biological_process
GO:0006415 translational termination biological_process
GO:0019083 viral transcription biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0005730 nucleolus cellular_component
GO:0005515 protein binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02894 RP-L23e, RPL23; large subunit ribosomal protein L23e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18169 lncRNA upstream 15417 26165630 ~ 26165982 (+) True G14623
TU18082 lncRNA upstream 245818 25933951 ~ 25935581 (+) True G14556
TU18012 lncRNA upstream 503050 25672259 ~ 25678349 (+) True G14510
TU18004 lncRNA upstream 569710 25604639 ~ 25611689 (+) True G14502
TU17932 lncRNA upstream 758373 25422443 ~ 25423026 (+) True G14455
TU18247 lncRNA downstream 28434 26213294 ~ 26215317 (+) True G14695
TU18260 lncRNA downstream 49466 26234326 ~ 26304342 (+) True G14703
TU18261 lncRNA downstream 54310 26239170 ~ 26241244 (+) True G14704
TU18322 lncRNA downstream 195191 26380051 ~ 26382420 (+) True G14755
TU18340 lncRNA downstream 212789 26397649 ~ 26397927 (+) True G14768
AMCG00016610 mRNA upstream 34423 26137776 ~ 26146976 (+) True AMCG00016610
AMCG00016611 mRNA upstream 46624 26122437 ~ 26134775 (+) True AMCG00016611
AMCG00016613 mRNA upstream 78686 26099372 ~ 26102713 (+) True AMCG00016613
AMCG00016612 mRNA upstream 85391 26086899 ~ 26096008 (+) True AMCG00016612
AMCG00016608 mRNA upstream 98135 26056769 ~ 26083264 (+) True AMCG00016608
AMCG00016618 mRNA downstream 9561 26194421 ~ 26198373 (+) True AMCG00016618
AMCG00016622 mRNA downstream 14629 26199489 ~ 26212158 (+) True AMCG00016622
AMCG00016620 mRNA downstream 48254 26233114 ~ 26237577 (+) True AMCG00016620
AMCG00016619 mRNA downstream 76872 26261732 ~ 26264293 (+) True AMCG00016619
AMCG00016625 mRNA downstream 100942 26285802 ~ 26302514 (+) True AMCG00016625
TU18062 other upstream 231223 25940528 ~ 25950176 (+) True AMCG00016607
TU18064 other upstream 231223 25940528 ~ 25950176 (+) False AMCG00016607
TU18026 other upstream 440841 25725848 ~ 25740558 (+) False AMCG00016598
TU17920 other upstream 789559 25370296 ~ 25391840 (+) False AMCG00016584
TU17811 other upstream 1023938 25150483 ~ 25157461 (+) True AMCG00016566
TU18257 other downstream 101003 26285863 ~ 26289222 (+) False AMCG00016625
TU18348 other downstream 242479 26427339 ~ 26432356 (+) True AMCG00016633
TU18353 other downstream 243863 26428723 ~ 26429327 (+) False AMCG00016633
TU18379 other downstream 420666 26605526 ~ 26657425 (+) False AMCG00016635
TU18699 other downstream 1361134 27545994 ~ 27547609 (+) False AMCG00016683

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051654 False 703 mRNA 0.49 5 NC_007114.7 33423986 ~ 33427803 (-)