RNA id: AMCG00016624


Basic Information

Item Value
RNA id AMCG00016624
length 1054
RNA type mRNA
GC content 0.49
exon number 5
gene id AMCG00016624
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26212386 ~ 26215060 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTCTCTAACGTTGCTACGCCTGAATAAAATAACTtctggaataaataaaacacgtTTTCTTCCCCCTGAAGGCCCAGGCCAACCTACAAAACTAGTCAAAATGTCGATCATGTCATATAACGGGGGAGCGGTGATGGCGATGCGTGGAAAAGGCTGTGTGGCCATCGCGGCGGACCGGCGGTTCGGGGTGCAGGCGCAGATGGTCACCACTGACTTTCAGAAGGTCTTCCCCATGGGTGATCGGCTCTACATCGGCCTGGCAGGGCTGGCCACCGACGTGCAGACAGTatttGGGCCATACTACATCGAGCCAGTGATCGCTGGCCTGGACCCCAAAACTCTGGAGCCATTCATCTGCTCTCTGGACCTGATCGGCTGCCCCATGGTGACAGAGGACTTTGTGGTGAGCGGCACGTGCTCGGAGCAGATGTACGGCATGTGTGAGTCGCTCTGGGAGCCCGACATGgaacCAGAGGACCTGTTTGAGACCATCTCGCAGGCCATGCTGAATGCAGTGGACAGAGACGCTGTGTCTGGGATGGGTGTCATAGTTCATGTCATtgaGAAGGACAAGATCACCACCAGGACACTGAAAGCCCGAATGGATTAAACCACCTCTCTTCACATTCACTTCATTCAGCTACAGCCCGCTctagattttataaataaaactgtttcactgtattgtttttcatgtgtggggggaggaggaggaggaggacgaggaggacgaggaggaaaAAGTCAATGAAATGGGTTTGACTGTGAAAGTGACTcagagtttttcttttctgggaGAATGGGAGACAGAGGCTCCCTGGTGCAGCTCGGAAGCCCTCGGGTTCTTCCTTTCTCCCACACACAGCCAGACGCTCACAAACATTCatactcacacagacacactcttaAACATACCTACCACACCGGGGTCAAATACCATTacatatctgtatttttaagtaCATCAAATACCGTTTAAATTTTGTTGTTCAAAGATTACAAATTGTATCTGGTTTGACAATAACTAATTGActatttgaaaatacttttttt

Function

GO:

id name namespace
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005839 proteasome core complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
K02735 PSMB3; 20S proteasome subunit beta 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18227 lncRNA downstream 27608 26181744 ~ 26184778 (-) False G14676
TU18228 lncRNA downstream 27608 26181744 ~ 26184778 (-) False G14676
TU18219 lncRNA downstream 63302 26148305 ~ 26149084 (-) False AMCG00016617
TU18197 lncRNA downstream 113414 26097728 ~ 26098972 (-) True G14650
TU18115 lncRNA downstream 190123 25971786 ~ 26022263 (-) True G14585
TU18283 lncRNA upstream 60117 26275177 ~ 26303459 (-) True G14723
TU18337 lncRNA upstream 179872 26394932 ~ 26395425 (-) True G14765
TU18347 lncRNA upstream 209972 26425032 ~ 26425250 (-) True G14775
TU18409 lncRNA upstream 212279 26427339 ~ 26518279 (-) False G14816
TU18415 lncRNA upstream 215395 26430455 ~ 26432353 (-) False G14818
AMCG00016616 mRNA downstream 52464 26159026 ~ 26159922 (-) False AMCG00016616
AMCG00016615 mRNA downstream 56936 26151611 ~ 26155450 (-) True AMCG00016615
AMCG00016617 mRNA downstream 62843 26147510 ~ 26149543 (-) True AMCG00016617
AMCG00016614 mRNA downstream 94936 26104916 ~ 26117450 (-) True AMCG00016614
AMCG00016601 mRNA downstream 386540 25824746 ~ 25825846 (-) True AMCG00016601
AMCG00016623 mRNA upstream 24022 26239082 ~ 26241390 (-) True AMCG00016623
AMCG00016629 mRNA upstream 89855 26304915 ~ 26309363 (-) True AMCG00016629
AMCG00016628 mRNA upstream 124433 26339493 ~ 26343614 (-) True AMCG00016628
AMCG00016627 mRNA upstream 157959 26373019 ~ 26374602 (-) True AMCG00016627
AMCG00016630 mRNA upstream 164988 26380048 ~ 26381729 (-) True AMCG00016630
TU18225 other downstream 27608 26181744 ~ 26184778 (-) False G14676
TU18226 other downstream 27608 26181744 ~ 26184778 (-) True G14676
TU18222 other downstream 52944 26156521 ~ 26159442 (-) True AMCG00016616
TU18183 other downstream 129219 26081503 ~ 26083167 (-) True G14637
TU18038 other downstream 457914 25752995 ~ 25754472 (-) True G14534
TU18278 other upstream 24022 26239082 ~ 26241106 (-) False AMCG00016623
TU18405 other upstream 212279 26427339 ~ 26518279 (-) False G14816
TU18407 other upstream 212279 26427339 ~ 26520397 (-) True G14816
TU18445 other upstream 353609 26568669 ~ 26571641 (-) True G14843
TU18448 other upstream 353609 26568669 ~ 26571641 (-) False G14843

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00063706 True 903 mRNA 0.46 6 NC_007117.7 16478099 ~ 16493516 (-)