RNA id: AMCG00016626


Basic Information

Item Value
RNA id AMCG00016626
length 3162
RNA type mRNA
GC content 0.64
exon number 17
gene id AMCG00016626
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26355605 ~ 26371140 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctctctcaggtgtgcAGTCGAGGCTGACAGTAGTGTGCTGTGTGCCGGCCACGTGTTCTGTCTCCCAGACCAGGTGGGGGGTCACAGTCCTGCCCATGGGCCCCCCCTGTGTGTCGTGACTCCTAGCAAACTGGCCacgcccacccccccacacagccCCCCCCAACAGGCCTCGCTGCCACTCGCCCCCCAGCTCCGCCCCCAGCCCAGCACCGCCCTGCTGGACGCACCTGAGCCCCCACCGCACCATGGGGGCCAAGAAGAGGCGGGAGACCAGCCTCTGTCCTTCACCGCCCCCCCACGCTGCCGGGATGTGTCCACCATCACTGAGCTGTGTAATAGCGGGGAGCTGCCGGAGGTGGAGATCGTCAGCCTGCTGCAGGAGAAGCTGCCCCATTACACCCTGCGTGCCGACTGCCTGTTCGGCTATGACCACGGCGACTGGCTGCAGACCCCCCTGCTGCCCCCTGAGGCCGCGCTGCAGCTCACCTTCCCCCAGATCGAGGAGACGCTCAAATACTTCTTGCTGTGCTCAGAGAGGGTCAGTCAGGTGACCAAGACGTACCATGACATAGACGCAGTGACACAGCTGCTGGAGGAGAAAGAGAGCGACCTGGAGCTGGCGGCTCGGATCGGCCAGTCCCTCCTGCAGCAGAACCGCTCGCTGACTGAGAGGAACGAGCTGCTGGACGAGCAACTGGAAATGGCCAAAGAGGAGATCGCTCAACTGCGGCATGAGCTGACCATGCGGGACGACCTGCTGCAGCTGTACACCAGCAGCGCCGAGGACAGCGAGCCCAACTCCACCTGCTCCACGCCGATGAGGCGTAACGAGTCATCCATCTCCCTGACTCACTACCTTCACTACGACTTCCTGCAGCAGAAACTGAAGGGCCTGGAGGACGAGAATCTGAAGCTGCGCTCTGAGGCCACCAATCTGACAACAGAGACGACAAATTATgaggagcaggagcagcagctgaTGATGGACTGTGTGCAGGAGCTGTCATCATCGAACAGGCAGGTGTGTGTGCTGTCGGAGGAGCTGGCCAGGAAGACTGAGGACGTGGTCCGGCAGCAGGAGGAGATCAGTCAGCTGCTCGCGCAGATCGTTGACCTGCAGCAACGAGCCAAGACACTCTCCACTGAGAACGAGGAGCTCAGTCAGCACCTGGGCACATCGCGGGAGGCCCAGGCCCGGCTCCGCTCAGAGCTGAGCGACCTGCAGGAGAAGTACGCAGAGTGTGAGAATATGCTGCAGGAGGCACGGGAGGACATGAAGACGTTGCGCTACAAGAGCGCGCCCAGCAGCACGGTGGCCCGCTACAGCACCCTGCCCATCTTCCCCATGGACTCACTTGCCGCCGAGATTGAGGGCACCATGCGGAAGGGCCTGGACAGCCCCGCACCCCCGGAGTACAAGAGTCACCCCTGGCGCGTGTTCGAGACCGTAAGGGCGGTGAACCAGGCAGTGCGGCTGCGCTCTAACTACGCTTCGCCGCTGATCCCCGGTTCCACCCCCCCGTCCGGGCTCTCCAGCCGTGTCAGCACGCCGCGCACCAGCTACTATGGCTCCGACTGCGCCAGCCTTACCCTAGAGGACAGGACCCCCGCCAGCCCCCAGCTGCCCGACGACTCGCTGCCCGAGGGGGCAGACAAGAAGCTGGGCCAGCCGGGCACCCCAGGGGGGCAAGACCTGGCTGCGGCGCTGCGGCGGCTGTCTGCGCGGCAGGAGAGCCATGCTTCGGAGTCGGAGCAGACATTTTTCGAGGTTGAGCGTGAGCGCAAACTGAAGGCGCTGGCGGCGCAGGGTGAGGGTGAGTGTGAGGGTGAGGCCGAGGCCGATGCATCCAGCGGCTTCCTGACACCCAACGACAGCATCCTCTCCACCGGCACCAACTACTCTGGCAGCTCCATGCACTCCGGCTCCGGCCTGTCCAGCGGCTCCCGGTCCTGCCTGCCCGACCGGCTGCAGATTGTCAAGCCACTGGAGGGCTCGGTCACTCTGCACCAGTGGCAGCAGTTGGCTCGGCCGCACCTGGGTGGGATCCTGTTGACCCGGCCTGGCGTTCTCACCAAAGACTTCCGGGAGCTGGAGGTGGACCAGGAGCAGGTGTACAGTCTGAATGACCTGGAGGAGGATGAGCCCGACCTGGGGCTGTTCCCCATGCTGACCGGCTCCAGGGCCAGGGTGCCTCAGTCCAGTAACAACCTGCCCcagaccccccccaccaacacTGTCACCACATGCCGGATCCTGCACCCTGCCCTGCAGCTCTCCTCCCTCTCGCACAGGGAGGGCCCTGGCTCCGGAGGCTGCTCCAGCTCTGAAGGAGCCTGTGTCACCACAGTAAGCGCTCCCTCGGTGTCACATGCCCCTTCCCCGGCTGGGCCCCCACACACGGGTGCAACCCCTCACCTCCCGGAGCGGCCTCCCTGCAGCCTGACGAGGGGGGCGTCTGGCCGGGCCCAGTGCAGCCTGCTGCATCACTGTGACCTGCGCTGGGACAGCCTGAGTGGCTCAGGCTGTGAATGTCGGCATGGGTTTAATAGCCAAGCCTCCCTGGTTCGTCCTCGCAGCCAGTCCTCTCGTGGCAGCTCTGAGGGGTTAGTCCTCCCAACCCCACACCTGCCACACTCCGAGTCCTCCACCAACCTCCGCGAACACACGCACTCCCACTGCTGCTCCCTGGGCCTGGTGCGGCTGCTGCAGGAGCAGGGCATCTCAGCTTCTGTCTACCCCCGGACCCTTGTCAACACTGGGCCAACCAACGCTGAGCTGGGGTCCCCCGAAAACCCCATCTCCTCGCCCCCCATGGCACCCCGGTGCTGTGGCCCGctcaccaagaccctgcctgaCTCCCAGCTGGCCGGGTCCATTCTCAGGGCCACGCAGGGGGAGCCGAGCAGAACCGGCAGTCCCAGAAGGCAGAagaacattttcagcttcaacctaGTGGAGAAGCTGCAGTCCCTGGGTCTGGCCCAAGTGGTGGCACGTGGAGTGGTGCCCTGCGAAGACAACACTGAGGAGTGCTGACCCACCCTGAGCCTGGAGACCTCGGAAaggaacagaaacacagaaaaaaaaatgctaaactTGAAAACGTCAATGGAAACTAAACTTAATCAATAATGAAACGCCAGCCTTGGCCTTGCCCG

Function

GO: NA

KEGG:

id description
K15369 TRAK1; trafficking kinesin-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18260 lncRNA upstream 51263 26234326 ~ 26304342 (+) True G14703
TU18261 lncRNA upstream 114361 26239170 ~ 26241244 (+) True G14704
TU18247 lncRNA upstream 140288 26213294 ~ 26215317 (+) True G14695
TU18169 lncRNA upstream 189623 26165630 ~ 26165982 (+) True G14623
TU18082 lncRNA upstream 420024 25933951 ~ 25935581 (+) True G14556
TU18322 lncRNA downstream 8911 26380051 ~ 26382420 (+) True G14755
TU18340 lncRNA downstream 26509 26397649 ~ 26397927 (+) True G14768
TU18354 lncRNA downstream 71012 26442152 ~ 26445762 (+) True G14781
TU18352 lncRNA downstream 124282 26495422 ~ 26499242 (+) True AMCG00016640
TU18364 lncRNA downstream 156179 26527319 ~ 26548212 (+) True AMCG00016638
AMCG00016625 mRNA upstream 53091 26285802 ~ 26302514 (+) True AMCG00016625
AMCG00016619 mRNA upstream 91312 26261732 ~ 26264293 (+) True AMCG00016619
AMCG00016620 mRNA upstream 118028 26233114 ~ 26237577 (+) True AMCG00016620
AMCG00016622 mRNA upstream 143447 26199489 ~ 26212158 (+) True AMCG00016622
AMCG00016618 mRNA upstream 157232 26194421 ~ 26198373 (+) True AMCG00016618
AMCG00016631 mRNA downstream 40345 26411485 ~ 26416977 (+) True AMCG00016631
AMCG00016633 mRNA downstream 58071 26429211 ~ 26433656 (+) False AMCG00016633
AMCG00016632 mRNA downstream 91183 26462323 ~ 26468002 (+) True AMCG00016632
AMCG00016640 mRNA downstream 118798 26489938 ~ 26497205 (+) False AMCG00016640
AMCG00016641 mRNA downstream 137901 26509041 ~ 26514287 (+) True AMCG00016641
TU18257 other upstream 66383 26285863 ~ 26289222 (+) False AMCG00016625
TU18062 other upstream 405429 25940528 ~ 25950176 (+) True AMCG00016607
TU18064 other upstream 405429 25940528 ~ 25950176 (+) False AMCG00016607
TU18026 other upstream 615047 25725848 ~ 25740558 (+) False AMCG00016598
TU17920 other upstream 963765 25370296 ~ 25391840 (+) False AMCG00016584
TU18348 other downstream 56199 26427339 ~ 26432356 (+) True AMCG00016633
TU18353 other downstream 57583 26428723 ~ 26429327 (+) False AMCG00016633
TU18379 other downstream 234386 26605526 ~ 26657425 (+) False AMCG00016635
TU18699 other downstream 1174854 27545994 ~ 27547609 (+) False AMCG00016683
TU18716 other downstream 1217339 27588479 ~ 27599592 (+) False AMCG00016691

Expression Profile