RNA id: AMCG00016627


Basic Information

Item Value
RNA id AMCG00016627
length 897
RNA type mRNA
GC content 0.55
exon number 3
gene id AMCG00016627
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26373019 ~ 26374602 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGGGGCAGGTGTATATAAGAAGCGGAGCGATGCGCTGCAACTCACAAGTTTTACCTTTAGCATCACCGAGACCGCTGCGCAACAGCGAACTGAGGAGTCTGCACTGCTACAGACATGACTGGCAGGAAGGTGTACATGTGCGCCCTGGTGACGGCACTGGCGGGGGTGTGCCTGGCGCTGCCATTGTCCAGCTCGGGGGGTGTGGTGCTGGCACACAGGGGCGCAAACGGGGGCACAGCCTGGGCACAGATGCTGGGCAGGCCGACGGAGGGCGGTGGCTGGGGGCAGGGAGCCCTGGGGGGCCGGGTGGCGAGGCAGGACCGGCTGGGCTCCCTGACTGAGGAGCAACGAGAGTTCATGTCTAAGTACATCCTGCAGACACTCACAGAGATGCTGAACAGGGAGGGCTGTCACGAGGAGAACCCCATCTCCATTTCTGACCGAGACTACCAGGGCTGGATGGACTTTGGCCGGCGCAGCACAGAGGAGCTGGGGCTGGACTCCTGAGCATGCGCCCCCTGCTGGGTGTTGGGCTGACCTGCACCCTGACACTGCCCTTGCTGTGATTCTGCTGCCAATTCACCTCCACCATTTACTGTACAGATCCCACAGATACAGTagatagtatttattttaaataaacaaacgccTTCTGTAATAATCTGTTCCCCtagtctgtattttattttttctgtgcacTCCTGTCAGTGTACTGTAAAGGTGGGGGGAGGCTGTGGTCTGTGACTACACAATGAAGCTAAACCACCTCCTGTTAGTTCAGTATCCTATCAGTTGTCCTCTTCCTTGGGTTCTGTTactaactaacaaacaaaaaaaacacccagaatTCAGACTCGAAGACAAGGAGACTAGGAGCCATTTATTGTTGGGAagc

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18283 lncRNA downstream 69560 26275177 ~ 26303459 (-) True G14723
TU18227 lncRNA downstream 188241 26181744 ~ 26184778 (-) False G14676
TU18228 lncRNA downstream 188241 26181744 ~ 26184778 (-) False G14676
TU18219 lncRNA downstream 223935 26148305 ~ 26149084 (-) False AMCG00016617
TU18197 lncRNA downstream 274047 26097728 ~ 26098972 (-) True G14650
TU18337 lncRNA upstream 20330 26394932 ~ 26395425 (-) True G14765
TU18347 lncRNA upstream 50430 26425032 ~ 26425250 (-) True G14775
TU18409 lncRNA upstream 52737 26427339 ~ 26518279 (-) False G14816
TU18415 lncRNA upstream 55853 26430455 ~ 26432353 (-) False G14818
TU18418 lncRNA upstream 55853 26430455 ~ 26468099 (-) True G14818
AMCG00016628 mRNA downstream 29405 26339493 ~ 26343614 (-) True AMCG00016628
AMCG00016629 mRNA downstream 63656 26304915 ~ 26309363 (-) True AMCG00016629
AMCG00016623 mRNA downstream 131629 26239082 ~ 26241390 (-) True AMCG00016623
AMCG00016624 mRNA downstream 157959 26212386 ~ 26215060 (-) True AMCG00016624
AMCG00016616 mRNA downstream 213097 26159026 ~ 26159922 (-) False AMCG00016616
AMCG00016630 mRNA upstream 5446 26380048 ~ 26381729 (-) True AMCG00016630
AMCG00016634 mRNA upstream 67557 26442159 ~ 26446820 (-) True AMCG00016634
AMCG00016643 mRNA upstream 210794 26585396 ~ 26591527 (-) False AMCG00016643
AMCG00016644 mRNA upstream 252105 26626707 ~ 26643493 (-) True AMCG00016644
AMCG00016645 mRNA upstream 280986 26655588 ~ 26660740 (-) True AMCG00016645
TU18278 other downstream 131913 26239082 ~ 26241106 (-) False AMCG00016623
TU18225 other downstream 188241 26181744 ~ 26184778 (-) False G14676
TU18226 other downstream 188241 26181744 ~ 26184778 (-) True G14676
TU18222 other downstream 213577 26156521 ~ 26159442 (-) True AMCG00016616
TU18183 other downstream 289852 26081503 ~ 26083167 (-) True G14637
TU18405 other upstream 52737 26427339 ~ 26518279 (-) False G14816
TU18407 other upstream 52737 26427339 ~ 26520397 (-) True G14816
TU18445 other upstream 194067 26568669 ~ 26571641 (-) True G14843
TU18448 other upstream 194067 26568669 ~ 26571641 (-) False G14843
TU18636 other upstream 894218 27268820 ~ 27279334 (-) True AMCG00016671

Expression Profile