RNA id: AMCG00016628


Basic Information

Item Value
RNA id AMCG00016628
length 2140
RNA type mRNA
GC content 0.56
exon number 9
gene id AMCG00016628
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26339493 ~ 26343614 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cccagcccagcccagccccgcCGCACCCTGATCGGATTCACAGCTGATGGTCCATCGTCCAATGCACCGCAAGTCGGGTGGTGCTTTGAACTTCCCACCATTGTCTTCAGTGGGAGTATGACGTGTGGTAGGGGTTAGGGATCGTCTGAAcggaataatagtaatatagaCCTTGCAATAGAACAAGCCTCTGTATGTTGTCACACgcaatctaataataataataataataataaaagaagaaaaaggcaaTACTGATTCGGTCTGAACTGAAGGGGTGCGACTCCACCGGCCCGTTAATTGAGCCACACCTGCGCTCAATCAGCACGACAGTCGGCTCTGTGAGAGGGCGCACATTGTTCTTAAACCAAAAAGTGCATTTCTGTACCAAGGCCTTTAGACCCCTTCAAGATAGTAGTGTTAGGCTGTCGCTAACTGTGAGTATACTACCATCCATTTGTGAGAAAATCAGTGCCATGTCTGTAGATTGACAGGCTCATGTTACAAGACTATTTGATCAAACAGGTGGAAGACGGGGGTTTTGGGGGTTGAAACGCTCTCAGTGGTAAACAGGCGGGCTTAGCACTTTAGACTTGCGTCTAAtgagtatttaaatattaagacCTTAAGACAGACAAGCAAACCCCACTCCTGTGTCTCCCCTCGTCTGGTGAAGCAGAAGCAGCATTTCCTCAATGAAAGGCAAGAGACGCGTGGCGGACAGCGCCGCCGGAGTGTGGCACTACTCCCACGGGCATGTGCCAGGGCAGGTGCTGGCGGTGGGGCAGGGAGATGTGGGGCAGCTGGGACTGGGGGAGGAAGTGCTGGAGCGGACCAGGGCGGCGCTGGTCAGGCTGCCGGCTCCGGTGGTGCAGGTGGAGGCGGGGGGAATGCATACGGTGTGCCTGACTGAGAATGGGGAGGTGTACACGTTCGGCTGCAATGACGAGGGAGGGCTGGGGCGCGACACGACGGAGGAGGGCTCGGAGACCACACCCGGGCGCGTGGCGCTGCCCAAGCCCACGGTGCAGGTGTCGGCAGGGGACAGCCACACAGCCGCACTGGCCCGTGACGGCACCGTCTTCATCTGGGGCTCCTTCAGGGACAACAGCGGGGTGATTGGCCTGCTGGAAGCCTGGGAGAAGAGTAATGATCACCTGGTGCTGCTGACGCTGAGCGGCTCTCTGCTCACCTGTGGCTGCGGGGAGCAGGGCCAGCTTGGCCGCGTGCCAGAGAGATTCACCAACCGTGGCGGGAGAGGGGGCCTGGCCCGTCTGCTGGTCCCCCAGGCTGTGCGGATCAAGGGCAGCGGCAGATTGAAGTTTCAGGATGTGTTCTGTGGCGCCTACTTCACCTTCGCCCTGACCTCAGAGGGACGAGTCTACTGTTTTGGCCTCTCCAACTACCACCAGCTGGgcACGCAGAGTCCCGTGTCGGTGTTCATGCCTCAGGTGACGGCTGGGTTCCAGGGGTCAGCGGTGTCCTGGGTCTCCTTCTCCGGGGGCCAGCACCACTCGCTGTGTCTGGACTCCACAGGGCAGGTGTACAGCCTAGGCAGGGCAGAGTACGGGCGGTTGGGTCTGGGCGCGGGTGCCAGGGAGCAGGTGTGTCCGGCCGCAGTGCCCGAGCTGAGCAGGGCGACCGTTGTGGCCTGCGGAGCATCGGTCAGCTACGCCATCACTAGTGACGGTTGTGCCCTCTCCTGGGGCATGGGCACCAACATGCAGCTGGGCACAGGCGAGGAGGATGACGCCTGGAGCCCCGTGCAGATGAGGGGCAAGCAGCTGGATGGCCATGCAGTACTGGCAGTGTCCAGCGGGGGGCAGCACACAATGCTCCTGATAAAGGACCAGAGCTGACAGGGGAGTCAGCAGCAGTCTCCAGGgcctaactctctctctctctctctctcgcgcgcTCGCTCATCCTGTCTGTTTTATCTTTACTGTGCTTTGAAGCTTGCCTCTGCTGCTCAAGGCAATATTAAAGGCAATATTCCGTATTCTGTTTTTATAGGAATCTGTacttcaaagaaaataagtgcaGAATATCTtagcattttttattgtgtgtgtgtttatgtgtgtatgtttgctCATGCGTGTGTAATGTATGcccattttgtgaaaatgaataaaat

Function

GO: NA

KEGG:

id description
K11493 RCC1; regulator of chromosome condensation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18283 lncRNA downstream 36034 26275177 ~ 26303459 (-) True G14723
TU18227 lncRNA downstream 154715 26181744 ~ 26184778 (-) False G14676
TU18228 lncRNA downstream 154715 26181744 ~ 26184778 (-) False G14676
TU18219 lncRNA downstream 190409 26148305 ~ 26149084 (-) False AMCG00016617
TU18197 lncRNA downstream 240521 26097728 ~ 26098972 (-) True G14650
TU18337 lncRNA upstream 51318 26394932 ~ 26395425 (-) True G14765
TU18347 lncRNA upstream 81418 26425032 ~ 26425250 (-) True G14775
TU18409 lncRNA upstream 83725 26427339 ~ 26518279 (-) False G14816
TU18415 lncRNA upstream 86841 26430455 ~ 26432353 (-) False G14818
TU18418 lncRNA upstream 86841 26430455 ~ 26468099 (-) True G14818
AMCG00016629 mRNA downstream 30130 26304915 ~ 26309363 (-) True AMCG00016629
AMCG00016623 mRNA downstream 98103 26239082 ~ 26241390 (-) True AMCG00016623
AMCG00016624 mRNA downstream 124433 26212386 ~ 26215060 (-) True AMCG00016624
AMCG00016616 mRNA downstream 179571 26159026 ~ 26159922 (-) False AMCG00016616
AMCG00016615 mRNA downstream 184043 26151611 ~ 26155450 (-) True AMCG00016615
AMCG00016627 mRNA upstream 29405 26373019 ~ 26374602 (-) True AMCG00016627
AMCG00016630 mRNA upstream 36434 26380048 ~ 26381729 (-) True AMCG00016630
AMCG00016634 mRNA upstream 98545 26442159 ~ 26446820 (-) True AMCG00016634
AMCG00016643 mRNA upstream 241782 26585396 ~ 26591527 (-) False AMCG00016643
AMCG00016644 mRNA upstream 283093 26626707 ~ 26643493 (-) True AMCG00016644
TU18278 other downstream 98387 26239082 ~ 26241106 (-) False AMCG00016623
TU18225 other downstream 154715 26181744 ~ 26184778 (-) False G14676
TU18226 other downstream 154715 26181744 ~ 26184778 (-) True G14676
TU18222 other downstream 180051 26156521 ~ 26159442 (-) True AMCG00016616
TU18183 other downstream 256326 26081503 ~ 26083167 (-) True G14637
TU18405 other upstream 83725 26427339 ~ 26518279 (-) False G14816
TU18407 other upstream 83725 26427339 ~ 26520397 (-) True G14816
TU18445 other upstream 225055 26568669 ~ 26571641 (-) True G14843
TU18448 other upstream 225055 26568669 ~ 26571641 (-) False G14843
TU18636 other upstream 925206 27268820 ~ 27279334 (-) True AMCG00016671

Expression Profile