RNA id: AMCG00016629



Basic Information


Item Value
RNA id AMCG00016629
length 1887
RNA type mRNA
GC content 0.62
exon number 14
gene id AMCG00016629
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26304915 ~ 26309363 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCCATGCATAtGACTGAGTCGAATGACGGCATGACGAAGGTGACGGAGTGGCAGCAGCAGTCCTACTTCACGGACTCCGGTATCCAGTCGGGCGCCACCACGGCTGCCCACTCCATGCGCGGTCTTCCTGACGATGGCAGCGAGTACAACAAGAAATACACAGTCACCACAACGACGTACACCACTGAGAGCCCCGCAGATGTGGAGTCACAGTACGCCATGACGCGTGCCCAACGCGTGCGGATGGCCATGTACCCGGAGACTGTGGTGGAGGGCTCCACTATTCTGTCCACGCAGACCGACCTGAGCCAGCAGACCAACGTGGTGGTGAACAAAGCGGCCATGATCGTGAACCAGCTGACCCGTAAGGATGCGTCGCGGCGCGTGTTGATGCAGTCACCTCAGATGGTGGCGGCGGTGGAGGGTGCCAAGATGGCAGTGCGGCTGGCCGACGGGCTGCAGAGGATGGTGCCACTGCTGAAGAAGAGCAACCCCAAGTTCCTGGCCATCACCACCGACTGCCTGCAGCTGCTGTCCTATGGCAACCAGGAGAGCAAGTTGATTATCCTGGCTAACGGGGGTCCGGAGGGGCTGGTGCAGATAATGCGCAACTACAACTACGAGAAGCTGCTGTGGACCACGAGCCGCGTGCTGAAGGTGCTGTCCGTGTGCCCCAGCAACAAGCCTGCCATCGTGGAGGCCGgcGGTATGCAGGCCCTGGGGAAGCACCTAACCGGCTCCAGTCCTCGCCTGATGCAGAACTGCCTGTGGACCCTGAGGAACCTCTCGGACGCTGCCACCAAGCAGGACGGTCTGGACGGGCTGCTGCAAATCCTGGTGGCCCAGCTGAGCTCCGACGATGTGAACATGCTGACCTGCGCCACGGGCATCCTGTCCAACCTGACCTGCAACAACAGCCGCAACAAGACACTGGTCACCCAGAGCAATGGCGTGGAGTCGCTGATCCAGGCCATCCTGCGCGCGGGCGAGAAGGAGGACATCACCGAACCGGCCGTGTGCGCCCTGCGCCACCTGACCAGCCGCCACGCGGACGCAGAGGTGGCACAGAATGCCGTGCGGCTGCACTACGGCATCCCCGCCATCGTCAACCTGCTCAATCAGCCCTACTACTGGCCTGTCATTAAGGCCACTGTGGGTCTGATCCGGAACCTGGCTCTGTGTCCAGTGAACCAGGCCCCCCTGCGCGATGCCGGCGCAGTCCCCCGCCTCATCAACCTGCTGGTCACTGCACACCAGGACGCCCAGCGCCACGCCACCTCCAGCACCCAGCAGACGTACCAGGATGGAGTGAGGATGGAGGAGATAGTGGAGGGGTGCACAGGCGCTCTGCACATCCTGGCGCGGGACCCTGTGAACCGCTCAGAGATCGCCAACCTGCACACCATCCCCCTCTTCGTACAGCTGCTGTACTCTCCCATCGAGAACGTGAAGCGCGTGGCGGCGGGCGCTCTGTGTGAGCTGGCTCTGGACAAGCAGTCGGCCGAGGAGATCGATGCCGAGGGGGCGTCCGCGCCGCTCATGGAGCTGCTGCACTCCAGCAACGAGGGCATCGCCACCTATGCCGCCGCTGTGCTGTTCCGGATCTCCGAGGACAAGAACTCCGACTACAGGAAGCGCGTGTCCGTGGAGCTGACCCACTCGCTGTTCAAACACGACCCTGCCGCCTGGGAGATGgccCACAAAACTGTGCAGATGGATCCTAGCTATGGTGTAGATGAAATGGACCCTGGGTACCACATGTACGGCTACGGGCAGGAGTCTATGCCCATGGAGCACGTGCCGATGGACGATATGGGCCCTGAGTATGGAGAGGACGTCCCCATGGACCACATGCTCAGGCAGGGCTACCAGGACCAGTACTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU18283 lncRNA downstream 1456 26275177 ~ 26303459 (-) True G14723
TU18227 lncRNA downstream 120137 26181744 ~ 26184778 (-) False G14676
TU18228 lncRNA downstream 120137 26181744 ~ 26184778 (-) False G14676
TU18219 lncRNA downstream 155831 26148305 ~ 26149084 (-) False AMCG00016617
TU18197 lncRNA downstream 205943 26097728 ~ 26098972 (-) True G14650
TU18337 lncRNA upstream 85569 26394932 ~ 26395425 (-) True G14765
TU18347 lncRNA upstream 115669 26425032 ~ 26425250 (-) True G14775
TU18409 lncRNA upstream 117976 26427339 ~ 26518279 (-) False G14816
TU18415 lncRNA upstream 121092 26430455 ~ 26432353 (-) False G14818
TU18418 lncRNA upstream 121092 26430455 ~ 26468099 (-) True G14818
AMCG00016623 mRNA downstream 63525 26239082 ~ 26241390 (-) True AMCG00016623
AMCG00016624 mRNA downstream 89855 26212386 ~ 26215060 (-) True AMCG00016624
AMCG00016616 mRNA downstream 144993 26159026 ~ 26159922 (-) False AMCG00016616
AMCG00016615 mRNA downstream 149465 26151611 ~ 26155450 (-) True AMCG00016615
AMCG00016617 mRNA downstream 155372 26147510 ~ 26149543 (-) True AMCG00016617
AMCG00016628 mRNA upstream 30130 26339493 ~ 26343614 (-) True AMCG00016628
AMCG00016627 mRNA upstream 63656 26373019 ~ 26374602 (-) True AMCG00016627
AMCG00016630 mRNA upstream 70685 26380048 ~ 26381729 (-) True AMCG00016630
AMCG00016634 mRNA upstream 132796 26442159 ~ 26446820 (-) True AMCG00016634
AMCG00016643 mRNA upstream 276033 26585396 ~ 26591527 (-) False AMCG00016643
TU18278 other downstream 63809 26239082 ~ 26241106 (-) False AMCG00016623
TU18225 other downstream 120137 26181744 ~ 26184778 (-) False G14676
TU18226 other downstream 120137 26181744 ~ 26184778 (-) True G14676
TU18222 other downstream 145473 26156521 ~ 26159442 (-) True AMCG00016616
TU18183 other downstream 221748 26081503 ~ 26083167 (-) True G14637
TU18405 other upstream 117976 26427339 ~ 26518279 (-) False G14816
TU18407 other upstream 117976 26427339 ~ 26520397 (-) True G14816
TU18445 other upstream 259306 26568669 ~ 26571641 (-) True G14843
TU18448 other upstream 259306 26568669 ~ 26571641 (-) False G14843
TU18636 other upstream 959457 27268820 ~ 27279334 (-) True AMCG00016671

Expression Profile



Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006450 False 6556 mRNA 0.39 14 NC_007122.7 11751006 ~ 11781911 (+)