RNA id: AMCG00016630


Basic Information

Item Value
RNA id AMCG00016630
length 799
RNA type mRNA
GC content 0.52
exon number 4
gene id AMCG00016630
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26380048 ~ 26381729 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGGCCAGGAGCACTCGCATTCCTGCCCCGACGAACGGCGAGAGCGGAGCAACCTGGCCAGCCAATGGCAGCGGGAATGGGGCGGGGCGTGGGGATGACCAGCCAATGGTAGCGGGAATGGGGCGGGGCGTGGGGATGACCAGCCAATGGGCCGCCGCAAGGGCGCTTTGCGGCTACCCCTTTGCTGATGCAACTAAGGGTGATGACCGGCTCCCGGCTGGGACAGAAGACTACATCCACATAAGAATCCAGCAGCGGAACGGCAGGAAGACTCTGACCACAGTCCAGGGCATTGCAGATGATTATGACAAGAAGAAACTAGTCAAAGCCTTCAAGAAGAAATTTGCCTGCAATGGGACGGTGATTGAGCACCCAGAGTATGGTGAAGTGATTCAGCTGCAGGGAGACCAGCGCAAGAATATCTGCCAGTTCCTTACTGAGATCGGCTTGGCCAAGGAGGAACAGCTGAAGGTCCATGGGTTCTAGGTGATGTGGGGAGCCCTGACCGTGCCGCTTGACGTTTGCAGCCCTTGCAGTCCTTGGATAATGACGGCCTCCAAATTAAGACTCTTAACTCTTTCCTCCCCTTGGAAGAGGGGGCCATCCAGTGCATTTAAGGACAGATAGCTCAATGTGACCAGGAATCGACTATAATGCAAGAGGAACCGCCGATTTTTAGTtttaacctttttcttttcGTGACCTTTAAGTGTGCTTCTTTTCAAGCACGAttccatgtttcttttttttttgtacaatgtttcaaaataaaatgagcagATGTCATTTTTCTGAA

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03113 EIF1, SUI1; translation initiation factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18283 lncRNA downstream 76589 26275177 ~ 26303459 (-) True G14723
TU18227 lncRNA downstream 195270 26181744 ~ 26184778 (-) False G14676
TU18228 lncRNA downstream 195270 26181744 ~ 26184778 (-) False G14676
TU18219 lncRNA downstream 230964 26148305 ~ 26149084 (-) False AMCG00016617
TU18197 lncRNA downstream 281076 26097728 ~ 26098972 (-) True G14650
TU18337 lncRNA upstream 13203 26394932 ~ 26395425 (-) True G14765
TU18347 lncRNA upstream 43303 26425032 ~ 26425250 (-) True G14775
TU18409 lncRNA upstream 45610 26427339 ~ 26518279 (-) False G14816
TU18415 lncRNA upstream 48726 26430455 ~ 26432353 (-) False G14818
TU18418 lncRNA upstream 48726 26430455 ~ 26468099 (-) True G14818
AMCG00016627 mRNA downstream 5446 26373019 ~ 26374602 (-) True AMCG00016627
AMCG00016628 mRNA downstream 36434 26339493 ~ 26343614 (-) True AMCG00016628
AMCG00016629 mRNA downstream 70685 26304915 ~ 26309363 (-) True AMCG00016629
AMCG00016623 mRNA downstream 138658 26239082 ~ 26241390 (-) True AMCG00016623
AMCG00016624 mRNA downstream 164988 26212386 ~ 26215060 (-) True AMCG00016624
AMCG00016634 mRNA upstream 60430 26442159 ~ 26446820 (-) True AMCG00016634
AMCG00016643 mRNA upstream 203667 26585396 ~ 26591527 (-) False AMCG00016643
AMCG00016644 mRNA upstream 244978 26626707 ~ 26643493 (-) True AMCG00016644
AMCG00016645 mRNA upstream 273859 26655588 ~ 26660740 (-) True AMCG00016645
AMCG00016642 mRNA upstream 280357 26662086 ~ 26664301 (-) True AMCG00016642
TU18278 other downstream 138942 26239082 ~ 26241106 (-) False AMCG00016623
TU18225 other downstream 195270 26181744 ~ 26184778 (-) False G14676
TU18226 other downstream 195270 26181744 ~ 26184778 (-) True G14676
TU18222 other downstream 220606 26156521 ~ 26159442 (-) True AMCG00016616
TU18183 other downstream 296881 26081503 ~ 26083167 (-) True G14637
TU18405 other upstream 45610 26427339 ~ 26518279 (-) False G14816
TU18407 other upstream 45610 26427339 ~ 26520397 (-) True G14816
TU18445 other upstream 186940 26568669 ~ 26571641 (-) True G14843
TU18448 other upstream 186940 26568669 ~ 26571641 (-) False G14843
TU18636 other upstream 887091 27268820 ~ 27279334 (-) True AMCG00016671

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00027610 False 1336 mRNA 0.44 4 NC_007130.7 5418006 ~ 5421610 (+)
grasscarp (Ctenopharyngodon idella) CI01000319_04787066_04788609.mRNA False 560 mRNA 0.50 4 CI01000319 4787066 ~ 4788705 (+)
mexican tetra (Astyanax mexicanus) TU266776 True 1138 lncRNA 0.44 4 NC_035919.1 10481407 ~ 10484765 (+)