RNA id: TU18379


Basic Information

Item Value
RNA id TU18379
length 395
RNA type TUCP
GC content 0.57
exon number 2
gene id AMCG00016635
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26600093 ~ 26657425 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCTGTGTCTCCTCTTTGTGTCCACTGTATGTCCGCTTTCATCTCCATGTTTCcttatttctgtcttttatGTTCTAAGTGTCTGACCTCGTGCCTCTGCCCCTCTGCAGCACCCACTCCCTGCTCAGCGAGGACTCGGAGAGCAGCGAGCGGCGACTCTTCAGCCCGTCAGGCTGGTCCAGTCAGGCCAGCAGCCCATACCCCCAGTCCCCTGGGCCCCACAAGCCGTTCTTCTCAGACCACAGCCTGGACAGGTACGACAGCAGGGCACTTGCCCAGCAGCCCCCCAGCGGACTGTCATACAGGAAGggcccccaccaccaccaccacccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18375 lncRNA upstream 8669 26589606 ~ 26596857 (+) True G14791
TU18364 lncRNA upstream 57314 26527319 ~ 26548212 (+) True AMCG00016638
TU18352 lncRNA upstream 106284 26495422 ~ 26499242 (+) True AMCG00016640
TU18354 lncRNA upstream 159764 26442152 ~ 26445762 (+) True G14781
TU18340 lncRNA upstream 207599 26397649 ~ 26397927 (+) True G14768
TU18388 lncRNA downstream 47572 26704997 ~ 26705204 (+) True G14800
TU18390 lncRNA downstream 54806 26712231 ~ 26713129 (+) True G14802
TU18391 lncRNA downstream 58144 26715569 ~ 26715801 (+) True G14803
TU18559 lncRNA downstream 308872 26966297 ~ 26993948 (+) True AMCG00016663
TU18626 lncRNA downstream 605465 27262890 ~ 27274297 (+) True G14992
AMCG00016646 mRNA upstream 21860 26583454 ~ 26583666 (+) True AMCG00016646
AMCG00016637 mRNA upstream 33169 26559807 ~ 26572357 (+) True AMCG00016637
AMCG00016638 mRNA upstream 57387 26529550 ~ 26548139 (+) False AMCG00016638
AMCG00016639 mRNA upstream 83919 26517843 ~ 26521607 (+) True AMCG00016639
AMCG00016641 mRNA upstream 91239 26509041 ~ 26514287 (+) True AMCG00016641
AMCG00016636 mRNA downstream 8020 26665445 ~ 26667680 (+) True AMCG00016636
AMCG00016647 mRNA downstream 26217 26683642 ~ 26700201 (+) True AMCG00016647
AMCG00016650 mRNA downstream 200293 26857718 ~ 26869181 (+) True AMCG00016650
AMCG00016654 mRNA downstream 235854 26893279 ~ 26897534 (+) True AMCG00016654
AMCG00016655 mRNA downstream 254543 26911968 ~ 26918768 (+) True AMCG00016655
TU18348 other upstream 173170 26427339 ~ 26432356 (+) True AMCG00016633
TU18353 other upstream 176199 26428723 ~ 26429327 (+) False AMCG00016633
TU18257 other upstream 316304 26285863 ~ 26289222 (+) False AMCG00016625
TU18062 other upstream 655350 25940528 ~ 25950176 (+) True AMCG00016607
TU18064 other upstream 655350 25940528 ~ 25950176 (+) False AMCG00016607
TU18699 other downstream 888569 27545994 ~ 27547609 (+) False AMCG00016683
TU18716 other downstream 931054 27588479 ~ 27599592 (+) False AMCG00016691
TU18717 other downstream 931054 27588479 ~ 27598648 (+) False AMCG00016691
TU18724 other downstream 955680 27613105 ~ 27619919 (+) False AMCG00016690
TU18835 other downstream 1171843 27829268 ~ 27831694 (+) True AMCG00016705

Expression Profile