RNA id: AMCG00016644


Basic Information

Item Value
RNA id AMCG00016644
length 6203
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00016644
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26626707 ~ 26643493 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCATTTGTCCACGACGTCAACATCCATATGTGTGACTGATGACAGAGAAAGGTCTAGAACGCAGTTGATGGAGAGCCGGGTCAGGGGGCTGCCGACAGATGTCTTTAGTGGGCTGCAGCATGCTGAGAGTAGGCAGTGTTGGTGTGCTGTGTTGGTGCCATCAGTCAACGCAAGAAACTGGTCCAAACAAGAGGAGCACTCCGAAACAGAAAGGCTGATTATGCCATCTTTCCTAATGGGTACAGCAGCAGTGACCTCTGACAGCCTAGTGGTGGTCTGCTCTCTGCACCGCAGGCGGCTGGATGGTTTAGGAGAGTTTCCACAGTTAACTGCTTTTGCgttttgtctctgtgtgtttgtcaaaATAGCTGAAAAGGGGGAGCAGATCAGCCTGGAACATCCCAATAACAGCCACATCCCCTGCAGCCCCGGGGACAAGAAGTGCATCCAGAAGCAGATTGCCAAGCGGGGTGAGAAGGGGACCAAccagaagaacaaaaacaaccgCGAGGACCCCAAGGCGGCTCTGGCGCCGTGCCGCGCTGAGTTGCAGAGGGCACTAGAGCGACTGGCATCCCACACTCGCACCCACGAGGACCTCTATACCTTCCTGATCCCCAACTGTGACAAAAACGGAGACTTCCACCCTAAGCAGTGCCACCCTGCACGTGATGGCCAGCGTGGGAAGTGCTGGTGCGTGGACCAGAAGACCGGCACCAAGCTTGGCTCCCAGGAGGCAAAGGGAGAGCTGGACTGCCACCAGCTGCTGGGGGAGCCACTGAGGGAGTGAGGCAGAGCCGTGCAGGATGGGCCTGGTGGCCCGACCAGTGCCCAGCTCTAGTGGTGCTGATTTGTACAATAAAGGAAAGGACTCAACCACACAACCTCACTTAACCTGTGGTGAACGGTACTGGGGTGTGCAAACCATGGTGGAATAcattctgtgtgtctgtgtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcgtgtgttGGTATATGTCTGCGTGCCCATCCTGTCGTGTTTTGTTTCGAAAAAGTAAAACAGCTGTTCTCTCTTTCAAaacttgcaaaaaaacaaatgaaaactaaacaaaacacaccaacCATCATAACTATTAAGGTGATGCTCTCGAAAACAGAATTGCTTTGTAAAGCAGATCAGTGTGAATTTTACCAAAACACAGCAATGCAattctttcacttttttattttttaaatcctattCCAAATCATAAGGCTTGGTAGTTGTGTTAATGAAGTTCAAAGACAGAGTGATATTTCAAgattaaatgatttaattggTAAATGTCACCAAGAAGTGTCCTTGGCGGCTTGTTGACTTGAGTTTATTTGCACATCCTCTCTTATGTTTaagctattttttattattattattattattattattattattattattatgatttgtattattattattgttgttgttattaatatttagatttttgtatatGCTTTAAATCAATCCTGCTCACATCACCGCAGTGTTCAGCTCTTCAGCCGCAGTCTGAGCACTGCTAGTGTCTTGTGAGaggaatatgtatttaattgccaAGGATCATAAGCTGCAGATTTCCAGTGCACTTGGAAGCAAAAACTGATTATACTTTGAAGGCAGAAACTCCACTTCAGAGGAGACAAATCCCAGAGCAGATGGGCTTTATCTCTGCCTCTCGCACCCCCGCTCGCTGGCTCTCCGCTCTCTTATTCGCACTCGAGGGGCTCTCTGTATAATCGCTTTTCTCCTCTGAGCTGGGAACACTGCTCAATGCTGATAGGGCTAATCTTATTACTACAGCAGAAGCCAAGGGGCTAGGAAACTGCTTCTGTTCTCAAGtagactttattttttctttctgtctttgtttctaaACTTTTTGGGGGCTTTTTTTTCTGGTTCACTGTGCTGCATGATATTGATACTGGTGCTATTCTGTTTCGAGCTCGGTGCTCAGAACGGCGTTGGCAGGTCTTGAAACGAAAGGGGAGAAACACAGATCCCAGTGTGTCTCTCCCTGTTCGGTTGCTAGAGGCTGCGTATTGTCCGTAGTGCAGCTTCAGCTTCATATTCTGAGGGAAAGAAATGAATCACAGAGTGCCAATATAGGTCTGGTTTAGGAGCTGGGTTAAAGCAACAGCTTTCTCTTCATGTGTATTCAGAGGCCATTAATCTCAATCTGCACTGGCAACGTTTCATTCATGGagtaaaatgaaattatttatgtaaaaagaacccataaataaataaaatacatattttacagtttaatgttCTACAGATATGTGTCAAACACAACATTCGGACAGCGGACAGTAAGGGCCCATGAAGGGGGTGCCTTCTGTACAGGCCTGTGGATCTGCCAGTAATTTCTGAAACAGGCAGACGGGAGAACAGCCCCTGAACCGAGCTGGATCCTTTCCTCCTTACAGTCaagctgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgccgtcCCCCCTCTctacacaacccccccccacacaccaccTCCGGAAACTGATCTTGATCAGCGCAGTTTGAGCTGTTCCAAAAGCTGAGGCGTACCCTGGAAATTCATGATAACTATGAActgtccttttttcttctttcttggaCATGTTCATAAACGGTTTGATCGCCACCAGGATGTGAAAGGAGAAAATGacagaaacactgaaaaaacaaacaaaatggaaaaaaaattaagtaaaggaatttgtattatttctgttatGGGCTAcattccacccccccacccactcttGAGCTGCTTTTCTCAGCTCGTATCAGTTAGAACATTTCCTGTTTAGTCTTGCTGCTCAGATCTGAATGCCAGCGTAGTCAAGGTCAGCATCTCCTACAAGAATGGATGATTTTGGCAGCTACTAAGTTCAACGTTTTACTTAGAAGCATGGCTGCTACGACCAACCTGCAGGACCTGCAAGCTGATTCCCCAGAGCTTTCAGAGTAAGCAGCAACACTGTCCATTGGTTacctgtgtctctctcacacacacacacacacacacacacacacacaaacatacgtTCTATGCACAAGCACCACacacatgtgtgtgcatgcatctctcacacacacctggCTGGCTGTGTACTTTGTTGCTATTAGTTTTTTACTTATTTGCACCgttttttattcctttctgTAATTTGCACATTGAAGCAGGTGGGGAGCTATGATGGACGTTGAATTGTGTGTCATCGAAAATGGTTTTAAACGTCCGATTCCCTAGAAACCTTTATAGAAGAGACCGGTGGAGCGACCCAGAGTGGGGGACAGTTATATCAAGGGCAGTGCGATTTGTAGTGatccaaaacactttccttAGATATAAATACTGTGTTAATGCAATAGAATGAGCGTACGGAAAACCAGCTACACTTTAGTGACATGAATACGTGTGGTCTTTTGTGTGTCATCAACATTCAACTGAAGTCATATCCAATGCTATAAACCAAGTGGCAACTTATTAACATCCAAAAGCACAGGCAATCGCTTTAGAGGAAgcaatgtgatttttttaaaatactgtgaatTGGCTTCCCGTTGGCTGTGGCAGTTAAAAGCACAAATAAGACCAGAGTTTGGGTGCAGTGCTGTATGTAACCAACAGAGGGCAGCACCAGCAACTGCCCCCTTACCCTGCCTCCAGAGATTTCCTCACAGATTAACCTGAACTGATCTGAACTCCATTTGGGGGAGGGGGCAAGCTCCAATGATTATAAGTgctttgcaattaaaacaaacatgagaaTCCCAATAAATGACAATGTAAGAGAAATGTCAGGAACACGTCAAAGAGAAGCCTGATTTTAGACACCACTGCTTCTCTCAGCATTGTGGTCACAAGATgcactttttacttttatttaattgatatattttttttattataaataaacttgAATCTTGGTTTAAGCATAAACCTAATTGACAAATTCTCAATTGTATTGACAGGATAGCCGTTAAGAGCATCATCATCAAAAGTAAAGAGGGAAGGTGTATAAAACCTATATTGGAAATGATAGTATACTCATGGCTGTTGTATTATTGGAGCACCATATATAACTGTGATATTGTAGCTTATCCTTGCTTTGGAAACACAAAGagtgatgtttatatatatatatatatatatatgtgtgtgtgtgtgtgtttttttatcaaAGTTGTGATTTGCTTCAGAAGCGAATGAATGAAGCAAACTGCCTATGGAGTGAAGAAGCTGCAGTTTGCCCTTCGTAGCTTTGACTCCTGCATGTATTGGACCAAGGGGCTGAAGAGACAAGGGGTTTCCATTGTAGACTAAGTGCTCTAATTAGGATTTGGCACCACATATCAacagtattgtatatatacTATAGTCAGTGGAGCTGGGAGAGAGATGTGAGCAGTCGTGCCGTGCCGTGTGAAGCCACTGTAAATCTGTGtgcagagaaaattaaaaacacgcAAAAAAAGACCCACAAAAGTCACTGTCTAAAGCCAAAGAGCGGccttaaccccctccctgctgGTGCGAAACTCACACTGAGTTTATATGATAatttttttggggtggggtgtcgttaaattacaaatacagataAGCGTAGATTggtggatttatatatttaacatgggggaggggggcaacaAAAGAAGCATAACTTGAATATATCCTTAAATCTTTGACTTGAATATGTGAACCAATCACAAGTACATTTATCATTGCAGGAGTCCTTGTTGTGCTGAATGTTACCAGAAAACACAACGacaataaacacaaagaaatacatgtcACTGACCACGCTCAGTGGCCAGTAAGCACCTAAGCTGGTGTGCCCCAGTTGGGCACATAGTGGAAGTGTGGCACTAGTACCAAAACACAGCGTGTATTTACTTCACCAGTTGGTACACTGTTTTAATATTGAACCTGTACCAAAACAAGAGATAAGCCAAAAGGATAGAGGATATAGCATGGGCGTGTTTATACGCGCAGTCGAGCTGAAACGCAGTGCTCATACAGGACTTGGCTCACTGACGGCCGGTCCTGGTTTGCTGGGTCTGAGAGCCTGCGGGGCATCGTGTACCAAAAAACTGATGGTGGACATCGCCTGGACTGTATGTCGAACTTGAGTGCCAATGTTTGTGGTGTCAGAATCTTAGCTGGGAGATGGGAGGGAGGAGGTGTCTGGAATTAAGTTTATAAGCACAAGGGTTCCAGAATTCAGCTGTGGCCTCCAAGGCTGTGGTAAAGAGTGATCAATGAGGGCATCAGGATTGCTTTACTGGCTACACCATGAATGCATTTCAATCATATTACTGcttgcattgtttttcttccttttttggcaaaattaatcaatcaatcaatcaagcaatTAATCAGtcagtaagtaaataaaacaatgcgtCGAAAGAAGGAAACATCTGATTGCATACAAAAGGGAAGCCACAGAACAGAATGGTGGAGGATGTAGTCTGGCCTCcagcagtttattttctttcgaCTCACCTGTTAGGCCCCCACAGGGCACCACAAGGGGGCAGCATTGGAGGGTAGGGGGGTCCCACAGTGGCCTGGGGGTATGGAAGTTCtctgaaaatgcattataagtacacatacatcacacacacacatacgcacgaAGGTAAATACATGGACAAGTATACAATAGAACTCGTTCTCGATCTGCTCTTAAATATCATGTTTtagcttaaaaagaaaaaagaaacctgcCTAATTTCTGCTGCTTCTCGGTcagcttgtgttgtgttttggcaTCTCTGGAAGAGACTCTTGCTTGCCTTTCGTTCCCTTTGCTACAGTAAGCTCATGCATCCAGTGTTTGAAAAAACGAGTTCTGTGAAAAGATGCTGTATGCTGAAAAGCCTTGGCCAGCAGGGGTGTCCGATGTTTTCGAACGTGTCCTGATCATGTATTGACGATGTGCGTCGGTATGACAACATGGCGATATTGGGATTTCAGCTCCTGGTCACATCCCTCTTGGGCAGCATTAACAAACAGTGGTGTTGATCTCATTGTGTATATACTATAAAACACTATGAAAATTGTTTCACTTCTAAAAGATATAAAATTgcataaatgtattacattttattaaagtattatagTACAACAA

Function

GO:

id name namespace
GO:0001558 regulation of cell growth biological_process
GO:0005576 extracellular region cellular_component
GO:0005520 insulin-like growth factor binding molecular_function

KEGG:

id description
K23576 IGFBP4; insulin-like growth factor-binding protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18442 lncRNA downstream 34407 26582526 ~ 26592300 (-) True AMCG00016643
TU18432 lncRNA downstream 103660 26522804 ~ 26523047 (-) True G14832
TU18418 lncRNA downstream 158608 26430455 ~ 26468099 (-) True G14818
TU18414 lncRNA downstream 158608 26463782 ~ 26468099 (-) False G14818
TU18416 lncRNA downstream 158608 26466325 ~ 26468099 (-) False G14818
TU18490 lncRNA upstream 97592 26741085 ~ 26742338 (-) True G14882
TU18569 lncRNA upstream 335665 26979158 ~ 26983486 (-) True G14943
TU18574 lncRNA upstream 351680 26995173 ~ 27003707 (-) False AMCG00016662
TU18637 lncRNA upstream 600473 27243966 ~ 27245247 (-) True G14999
TU18640 lncRNA upstream 620220 27263713 ~ 27265603 (-) True G15001
AMCG00016643 mRNA downstream 35180 26585396 ~ 26591527 (-) False AMCG00016643
AMCG00016634 mRNA downstream 179887 26442159 ~ 26446820 (-) True AMCG00016634
AMCG00016630 mRNA downstream 244978 26380048 ~ 26381729 (-) True AMCG00016630
AMCG00016627 mRNA downstream 252105 26373019 ~ 26374602 (-) True AMCG00016627
AMCG00016628 mRNA downstream 283093 26339493 ~ 26343614 (-) True AMCG00016628
AMCG00016645 mRNA upstream 12095 26655588 ~ 26660740 (-) True AMCG00016645
AMCG00016642 mRNA upstream 18593 26662086 ~ 26664301 (-) True AMCG00016642
AMCG00016649 mRNA upstream 78294 26721787 ~ 26732090 (-) True AMCG00016649
AMCG00016648 mRNA upstream 100091 26743584 ~ 26749062 (-) True AMCG00016648
AMCG00016651 mRNA upstream 173315 26816808 ~ 26822326 (-) True AMCG00016651
TU18445 other downstream 55066 26568669 ~ 26571641 (-) True G14843
TU18448 other downstream 55066 26568669 ~ 26571641 (-) False G14843
TU18407 other downstream 106310 26427339 ~ 26520397 (-) True G14816
TU18405 other downstream 108428 26427339 ~ 26518279 (-) False G14816
TU18278 other downstream 385601 26239082 ~ 26241106 (-) False AMCG00016623
TU18636 other upstream 625327 27268820 ~ 27279334 (-) True AMCG00016671
TU18673 other upstream 726097 27369590 ~ 27370139 (-) True G15026
TU18738 other upstream 758183 27401676 ~ 27403922 (-) True G15067
TU18749 other upstream 781400 27424893 ~ 27428651 (-) True G15076
TU19143 other upstream 2137979 28781472 ~ 28785507 (-) True AMCG00016732

Expression Profile