RNA id: TU18464


Basic Information

Item Value
RNA id TU18464
length 5073
lncRNA type sense_over
GC content 0.41
exon number 2
gene id AMCG00016644
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26626707 ~ 26643493 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTGTTTCGAAAAAGTAAAACAGCTGTTCTCTCTTTCAAaacttgcaaaaaaacaaatgaaaactaaacaaaacacaccaacCATCATAACTATTAAGGTGATGCTCTCGAAAACAGAATTGCTTTGTAAAGCAGATCAGTGTGAATTTTACCAAAACACAGCAATGCAattctttcacttttttattttttaaatcctattCCAAATCATAAGGCTTGGTAGTTGTGTTAATGAAGTTCAAAGACAGAGTGATATTTCAAgattaaatgatttaattggTAAATGTCACCAAGAAGTGTCCTTGGCGGCTTGTTGACTTGAGTTTATTTGCACATCCTCTCTTATGTTTaagctattttttattattattattattattattattattattattattatgatttgtattattattattgttgttgttattaatatttagatttttgtatatGCTTTAAATCAATCCTGCTCACATCACCGCAGTGTTCAGCTCTTCAGCCGCAGTCTGAGCACTGCTAGTGTCTTGTGAGaggaatatgtatttaattgccaAGGATCATAAGCTGCAGATTTCCAGTGCACTTGGAAGCAAAAACTGATTATACTTTGAAGGCAGAAACTCCACTTCAGAGGAGACAAATCCCAGAGCAGATGGGCTTTATCTCTGCCTCTCGCACCCCCGCTCGCTGGCTCTCCGCTCTCTTATTCGCACTCGAGGGGCTCTCTGTATAATCGCTTTTCTCCTCTGAGCTGGGAACACTGCTCAATGCTGATAGGGCTAATCTTATTACTACAGCAGAAGCCAAGGGGCTAGGAAACTGCTTCTGTTCTCAAGtagactttattttttctttctgtctttgtttctaaACTTTTTGGGGGCTTTTTTTTCTGGTTCACTGTGCTGCATGATATTGATACTGGTGCTATTCTGTTTCGAGCTCGGTGCTCAGAACGGCGTTGGCAGGTCTTGAAACGAAAGGGGAGAAACACAGATCCCAGTGTGTCTCTCCCTGTTCGGTTGCTAGAGGCTGCGTATTGTCCGTAGTGCAGCTTCAGCTTCATATTCTGAGGGAAAGAAATGAATCACAGAGTGCCAATATAGGTCTGGTTTAGGAGCTGGGTTAAAGCAACAGCTTTCTCTTCATGTGTATTCAGAGGCCATTAATCTCAATCTGCACTGGCAACGTTTCATTCATGGagtaaaatgaaattatttatgtaaaaagaacccataaataaataaaatacatattttacagtttaatgttCTACAGATATGTGTCAAACACAACATTCGGACAGCGGACAGTAAGGGCCCATGAAGGGGGTGCCTTCTGTACAGGCCTGTGGATCTGCCAGTAATTTCTGAAACAGGCAGACGGGAGAACAGCCCCTGAACCGAGCTGGATCCTTTCCTCCTTACAGTCaagctgggtgtgtgtgtgtgtgtgtgtgtgtgtgccgtcCCCCCTCTctacacaacccccccccacacaccaccTCCGGAAACTGATCTTGATCAGCGCAGTTTGAGCTGTTCCAAAAGCTGAGGCGTACCCTGGAAATTCATGATAACTATGAActgtccttttttcttctttcttggaCATGTTCATAAACGGTTTGATCGCCACCAGGATGTGAAAGGAGAAAATGacagaaacactgaaaaaacaaacaaaatggaaaaaaaattaagtaaaggaatttgtattatttctgttatGGGCTAcattccacccccccacccactcttGAGCTGCTTTTCTCAGCTCGTATCAGTTAGAACATTTCCTGTTTAGTCTTGCTGCTCAGATCTGAATGCCAGCGTAGTCAAGGTCAGCATCTCCTACAAGAATGGATGATTTTGGCAGCTACTAAGTTCAACGTTTTACTTAGAAGCATGGCTGCTACGACCAACCTGCAGGACCTGCAAGCTGATTCCCCAGAGCTTTCAGAGTAAGCAGCAACACTGTCCATTGGTTacctgtgtctctctcacacacacacacacacacacacacacacacaaacatacgtTCTATGCACAAGCACCACacacatgtgtgtgcatgcatctctcacacacacctggCTGGCTGTGTACTTTGTTGCTATTAGTTTTTTACTTATTTGCACCgttttttattcctttctgTAATTTGCACATTGAAGCAGGTGGGGAGCTATGATGGACGTTGAATTGTGTGTCATCGAAAATGGTTTTAAACGTCCGATTCCCTAGAAACCTTTATAGAAGAGACCGGTGGAGCGACCCAGAGTGGGGGACAGTTATATCAAGGGCAGTGCGATTTGTAGTGatccaaaacactttccttAGATATAAATACTGTGTTAATGCAATAGAATGAGCGTACGGAAAACCAGCTACACTTTAGTGACATGAATACGTGTGGTCTTTTGTGTGTCATCAACATTCAACTGAAGTCATATCCAATGCTATAAACCAAGTGGCAACTTATTAACATCCAAAAGCACAGGCAATCGCTTTAGAGGAAgcaatgtgatttttttaaaatactgtgaatTGGCTTCCCGTTGGCTGTGGCAGTTAAAAGCACAAATAAGACCAGAGTTTGGGTGCAGTGCTGTATGTAACCAACAGAGGGCAGCACCAGCAACTGCCCCCTTACCCTGCCTCCAGAGATTTCCTCACAGATTAACCTGAACTGATCTGAACTCCATTTGGGGGAGGGGGCAAGCTCCAATGATTATAAGTgctttgcaattaaaacaaacatgagaaTCCCAATAAATGACAATGTAAGAGAAATGTCAGGAACACGTCAAAGAGAAGCCTGATTTTAGACACCACTGCTTCTCTCAGCATTGTGGTCACAAGATgcactttttacttttatttaattgatatattttttttattataaataaacttgAATCTTGGTTTAAGCATAAACCTAATTGACAAATTCTCAATTGTATTGACAGGATAGCCGTTAAGAGCATCATCATCAAAAGTAAAGAGGGAAGGTGTATAAAACCTATATTGGAAATGATAGTATACTCATGGCTGTTGTATTATTGGAGCACCATATATAACTGTGATATTGTAGCTTATCCTTGCTTTGGAAACACAAAGagtgatgtttatatatatatatatatatatatgtgtgtgtgtgtgtgtttttttatcaaAGTTGTGATTTGCTTCAGAAGCGAATGAATGAAGCAAACTGCCTATGGAGTGAAGAAGCTGCAGTTTGCCCTTCGTAGCTTTGACTCCTGCATGTATTGGACCAAGGGGCTGAAGAGACAAGGGGTTTCCATTGTAGACTAAGTGCTCTAATTAGGATTTGGCACCACATATCAacagtattgtatatatacTATAGTCAGTGGAGCTGGGAGAGAGATGTGAGCAGTCGTGCCGTGCCGTGTGAAGCCACTGTAAATCTGTGtgcagagaaaattaaaaacacgcAAAAAAAGACCCACAAAAGTCACTGTCTAAAGCCAAAGAGCGGccttaaccccctccctgctgGTGCGAAACTCACACTGAGTTTATATGATAatttttttggggtggggtgtcgttaaattacaaatacagataAGCGTAGATTggtggatttatatatttaacatgggggaggggggcaacaAAAGAAGCATAACTTGAATATATCCTTAAATCTTTGACTTGAATATGTGAACCAATCACAAGTACATTTATCATTGCAGGAGTCCTTGTTGTGCTGAATGTTACCAGAAAACACAACGacaataaacacaaagaaatacatgtcACTGACCACGCTCAGTGGCCAGTAAGCACCTAAGCTGGTGTGCCCCAGTTGGGCACATAGTGGAAGTGTGGCACTAGTACCAAAACACAGCGTGTATTTACTTCACCAGTTGGTACACTGTTTTAATATTGAACCTGTACCAAAACAAGAGATAAGCCAAAAGGATAGAGGATATAGCATGGGCGTGTTTATACGCGCAGTCGAGCTGAAACGCAGTGCTCATACAGGACTTGGCTCACTGACGGCCGGTCCTGGTTTGCTGGGTCTGAGAGCCTGCGGGGCATCGTGTACCAAAAAACTGATGGTGGACATCGCCTGGACTGTATGTCGAACTTGAGTGCCAATGTTTGTGGTGTCAGAATCTTAGCTGGGAGATGGGAGGGAGGAGGTGTCTGGAATTAAGTTTATAAGCACAAGGGTTCCAGAATTCAGCTGTGGCCTCCAAGGCTGTGGTAAAGAGTGATCAATGAGGGCATCAGGATTGCTTTACTGGCTACACCATGAATGCATTTCAATCATATTACTGcttgcattgtttttcttccttttttggcaaaattaatcaatcaatcaatcaagcaatTAATCAGtcagtaagtaaataaaacaatgcgtCGAAAGAAGGAAACATCTGATTGCATACAAAAGGGAAGCCACAGAACAGAATGGTGGAGGATGTAGTCTGGCCTCcagcagtttattttctttcgaCTCACCTGTTAGGCCCCCACAGGGCACCACAAGGGGGCAGCATTGGAGGGTAGGGGGGTCCCACAGTGGCCTGGGGGTATGGAAGTTCtctgaaaatgcattataagtacacatacatcacacacacacatacgcacgaAGGTAAATACATGGACAAGTATACAATAGAACTCGTTCTCGATCTGCTCTTAAATATCATGTTTtagcttaaaaagaaaaaagaaacctgcCTAATTTCTGCTGCTTCTCGGTcagcttgtgttgtgttttggcaTCTCTGGAAGAGACTCTTGCTTGCCTTTCGTTCCCTTTGCTACAGTAAGCTCATGCATCCAGTGTTTGAAAAAACGAGTTCTGTGAAAAGATGCTGTATGCTGAAAAGCCTTGGCCAGCAGGGGTGTCCGATGTTTTCGAACGTGTCCTGATCATGTATTGACGATGTGCGTCGGTATGACAACATGGCGATATTGGGATTTCAGCTCCTGGTCACATCCCTCTTGGGCAGCATTAACAAACAGTGGTGTTGATCTCATTGTGTATATACTATAAAACACTATGAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18442 lncRNA downstream 34477 26582526 ~ 26592300 (-) True AMCG00016643
TU18432 lncRNA downstream 103730 26522804 ~ 26523047 (-) True G14832
TU18418 lncRNA downstream 158678 26430455 ~ 26468099 (-) True G14818
TU18414 lncRNA downstream 158678 26463782 ~ 26468099 (-) False G14818
TU18416 lncRNA downstream 158678 26466325 ~ 26468099 (-) False G14818
TU18490 lncRNA upstream 109210 26741085 ~ 26742338 (-) True G14882
TU18569 lncRNA upstream 347283 26979158 ~ 26983486 (-) True G14943
TU18574 lncRNA upstream 363298 26995173 ~ 27003707 (-) False AMCG00016662
TU18637 lncRNA upstream 612091 27243966 ~ 27245247 (-) True G14999
TU18640 lncRNA upstream 631838 27263713 ~ 27265603 (-) True G15001
AMCG00016643 mRNA downstream 35250 26585396 ~ 26591527 (-) False AMCG00016643
AMCG00016634 mRNA downstream 179957 26442159 ~ 26446820 (-) True AMCG00016634
AMCG00016630 mRNA downstream 245048 26380048 ~ 26381729 (-) True AMCG00016630
AMCG00016627 mRNA downstream 252175 26373019 ~ 26374602 (-) True AMCG00016627
AMCG00016628 mRNA downstream 283163 26339493 ~ 26343614 (-) True AMCG00016628
AMCG00016645 mRNA upstream 23713 26655588 ~ 26660740 (-) True AMCG00016645
AMCG00016642 mRNA upstream 30211 26662086 ~ 26664301 (-) True AMCG00016642
AMCG00016649 mRNA upstream 89912 26721787 ~ 26732090 (-) True AMCG00016649
AMCG00016648 mRNA upstream 111709 26743584 ~ 26749062 (-) True AMCG00016648
AMCG00016651 mRNA upstream 184933 26816808 ~ 26822326 (-) True AMCG00016651
TU18445 other downstream 55136 26568669 ~ 26571641 (-) True G14843
TU18448 other downstream 55136 26568669 ~ 26571641 (-) False G14843
TU18407 other downstream 106380 26427339 ~ 26520397 (-) True G14816
TU18405 other downstream 108498 26427339 ~ 26518279 (-) False G14816
TU18278 other downstream 385671 26239082 ~ 26241106 (-) False AMCG00016623
TU18636 other upstream 636945 27268820 ~ 27279334 (-) True AMCG00016671
TU18673 other upstream 737715 27369590 ~ 27370139 (-) True G15026
TU18738 other upstream 769801 27401676 ~ 27403922 (-) True G15067
TU18749 other upstream 793018 27424893 ~ 27428651 (-) True G15076
TU19143 other upstream 2149597 28781472 ~ 28785507 (-) True AMCG00016732

Expression Profile