RNA id: AMCG00016645


Basic Information

Item Value
RNA id AMCG00016645
length 1149
RNA type mRNA
GC content 0.64
exon number 4
gene id AMCG00016645
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26655588 ~ 26660740 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGGGTCGAGTACTGCTGCTGGGGCTGGATGCTGCGGGCAAAACCACCCTGCTGTATAAGCTGAAGCTGGGCGAGGTGGTCAGCACTATCCCCACTGTGGGCTTCAATGTGGAGACGGTGGAGCCGGCAGCTGGGGTGTCCTTTGTGGTGTGGGACGTGGGGGGCCAGGACAAGATCCGGGCGCTGTGGCGGCACTACTACCAGAACGCGGAGGGACTGCTGTTTGTGGTGGACAGCGTGGATACCCAGCGCTTCCTAGAGGCCCAGGAGGAGTTGGATGCCATCCTGTCCCACGTGGAGATGAGAGACGTGCCCGTGGTGCTGCTCGCCAACAAGCAGGACCTGCCGGGGGCGCGTGGCCCGGGCGAAGTGGCAGAGGCACTGGGGCTGCACAAGAGGAGAGACAACCCCTGGCATGCGCAGGGCTGCTACACTGCGCTGAAGATGGTTCTCCTGGCTTTAGGGACTCTGCACCTGCTCCTGCAGCCGACTCCTCTCAGGACGAGGAGACATCTGGCGGGTCGAGCACAGGAGAGCCGAGCAGAGGAAGCAGAGCTGAGAAGCAGTGCAGTCCCCATGTGGGGTGTGATGCCACCGGGCGGGCTGTGGGTGGTTTGCATGCTGGCGCTGGCCGCCCTGTGCCTGACGGAGGAGGCCATCCGCTGTCCACCCTGCTCCGAGGAGCGCCTGGCTCGCTGCAAGCAGCCGCCGGGCTGTGAGGAGACGGTGCGCGAGCCGGGCTGTGGGTGCTGCCCCACCTGCGCCCTGGCCAAGGGCATGTACTGCGGAGTGTACTCGCCCCGCTGCGGCTCCGGCCTGCGCTGCTACCCCCCGCGAGGCGTGGATAAGCCCCTGCACTCTCTCATGCATGGCCAGGGTATCTGCACCGACGAGAGGGAGGTGGAGCAGCTCATAGGCCTCTCGGGAGTATGGCATATGGCTTCTTACGCCAGGTCAGGGGAGTCTTCCTGCAGTGGCAATCTTCCCGCTGGTGCGATCCGAACGGGGACTGTGGGTGACCTTGGGCAACACttgcacacagcacagaaacTGCCCAGTCCCAGTGCCACAGTCTTCCAGGGTCAGCGAGTGCAGGCAGTCGTAGTCTGGTTTCTAGTGAGAGAGGCGCTGTCCTCCAGTGCATGA

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18464 lncRNA downstream 23713 26626777 ~ 26631875 (-) False AMCG00016644
TU18442 lncRNA downstream 63288 26582526 ~ 26592300 (-) True AMCG00016643
TU18432 lncRNA downstream 132541 26522804 ~ 26523047 (-) True G14832
TU18418 lncRNA downstream 187489 26430455 ~ 26468099 (-) True G14818
TU18490 lncRNA upstream 80345 26741085 ~ 26742338 (-) True G14882
TU18569 lncRNA upstream 318418 26979158 ~ 26983486 (-) True G14943
TU18574 lncRNA upstream 334433 26995173 ~ 27003707 (-) False AMCG00016662
TU18637 lncRNA upstream 583226 27243966 ~ 27245247 (-) True G14999
TU18640 lncRNA upstream 602973 27263713 ~ 27265603 (-) True G15001
AMCG00016644 mRNA downstream 12095 26626707 ~ 26643493 (-) True AMCG00016644
AMCG00016643 mRNA downstream 64061 26585396 ~ 26591527 (-) False AMCG00016643
AMCG00016634 mRNA downstream 208768 26442159 ~ 26446820 (-) True AMCG00016634
AMCG00016630 mRNA downstream 273859 26380048 ~ 26381729 (-) True AMCG00016630
AMCG00016627 mRNA downstream 280986 26373019 ~ 26374602 (-) True AMCG00016627
AMCG00016642 mRNA upstream 1346 26662086 ~ 26664301 (-) True AMCG00016642
AMCG00016649 mRNA upstream 61047 26721787 ~ 26732090 (-) True AMCG00016649
AMCG00016648 mRNA upstream 82844 26743584 ~ 26749062 (-) True AMCG00016648
AMCG00016651 mRNA upstream 156068 26816808 ~ 26822326 (-) True AMCG00016651
AMCG00016653 mRNA upstream 172454 26833194 ~ 26839113 (-) True AMCG00016653
TU18445 other downstream 83947 26568669 ~ 26571641 (-) True G14843
TU18448 other downstream 83947 26568669 ~ 26571641 (-) False G14843
TU18407 other downstream 135191 26427339 ~ 26520397 (-) True G14816
TU18405 other downstream 137309 26427339 ~ 26518279 (-) False G14816
TU18278 other downstream 414482 26239082 ~ 26241106 (-) False AMCG00016623
TU18636 other upstream 608080 27268820 ~ 27279334 (-) True AMCG00016671
TU18673 other upstream 708850 27369590 ~ 27370139 (-) True G15026
TU18738 other upstream 740936 27401676 ~ 27403922 (-) True G15067
TU18749 other upstream 764153 27424893 ~ 27428651 (-) True G15076
TU19143 other upstream 2120732 28781472 ~ 28785507 (-) True AMCG00016732

Expression Profile