RNA id: AMCG00016651


Basic Information

Item Value
RNA id AMCG00016651
length 1056
RNA type mRNA
GC content 0.69
exon number 4
gene id AMCG00016651
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26816808 ~ 26822326 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGAATAACATCCTGGGCATTATACTGGGGCTGAGGGTGAATCTGGCGCTGGCCTACACCGAGCTGACTGAGGAGCTGTGTCGGCTGCAGACCCTGAGCGCCAAGCAGACTGAGATTCTGAGGAAGGTGTCCCAGGAGCAGGCCAGCCCAGTCCAGCGGCACTCCCCAGTGCTGCAGCAGCGGCACTCCCCCAGCCCACAGCGGCACTCCCCAGCCCCCCAGCGCCGCTCCCCGGTGCCGCAGCGCCTGTCCCCGGATGTTCACCGCCGCTCTCCGCTCCCGGAGATGAGTGACGGCCCGGCCTCCTACTCTAGCCGGCCGCCCAGCCACCACCTGCGCGCCAGCTTCCAGGGCCGGCGCAGCTACTCCGAGGTCAGCGACCCCTCCGCCTATCAGCGGCCGCCTCGGTTCCAGCTGGACCCGGTGTCCACTCTGCCCAAGCCACGGCCGTACGGAGAGGGCTACCTGAAACAGCAGCATCACCATCactccccccaccaccaccagcagcagcagcatcatcaGCCGCAGCACCCGGCACAAGCTCCGCCCTCCTCTCCGGTGCAGGGGGGGGGCGGCGGCAGCGTGGCCAGCAGCCCCCGCCACACCAGGGAGCTTCCCTTCCCTCTTTCCGAGGTGCACCACCTGCGGTTCGAGCAGCCGGCCCCGCCCCCTCCGCCTCCACCGCCCACGCCCCCCTTGCCCCCCCAGTCCTCAGAGGATGAGGAAGAGTGggcctgcccccccaccacgcCACCCGGCTCGCTGGGAGGAgctgctgccgccgccgctgccgccgccgccgccatCCGGGGCCCATCCTCCTGCTCCACCTTCCCCATCCCTGCCGGCCCCAGCACCCTCACCTGCCACCCGGCAGCCTACCTGCATCCCGACCACGCCCAGTCCTGGCCCTCCATCAACCTGTGGATGGAGACAGAGGACAACGACATCAGGAGCTGCCCCCTGTGTCAGCTGGCCTTCCCCATCGGTTACCCTGATGACGCCCTGATCAAACACATCGACACGCACCTGGAGAACAGCAAGATCTGA

Function

GO: NA

KEGG:

id description
K12652 TBKBP1; TANK-binding kinase 1-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18490 lncRNA downstream 74470 26741085 ~ 26742338 (-) True G14882
TU18464 lncRNA downstream 184933 26626777 ~ 26631875 (-) False AMCG00016644
TU18442 lncRNA downstream 224508 26582526 ~ 26592300 (-) True AMCG00016643
TU18432 lncRNA downstream 293761 26522804 ~ 26523047 (-) True G14832
TU18416 lncRNA downstream 348709 26466325 ~ 26468099 (-) False G14818
TU18569 lncRNA upstream 156832 26979158 ~ 26983486 (-) True G14943
TU18574 lncRNA upstream 172847 26995173 ~ 27003707 (-) False AMCG00016662
TU18637 lncRNA upstream 421640 27243966 ~ 27245247 (-) True G14999
TU18640 lncRNA upstream 441387 27263713 ~ 27265603 (-) True G15001
TU18659 lncRNA upstream 473759 27296085 ~ 27308958 (-) True G15016
AMCG00016648 mRNA downstream 67746 26743584 ~ 26749062 (-) True AMCG00016648
AMCG00016649 mRNA downstream 84718 26721787 ~ 26732090 (-) True AMCG00016649
AMCG00016642 mRNA downstream 152507 26662086 ~ 26664301 (-) True AMCG00016642
AMCG00016645 mRNA downstream 156068 26655588 ~ 26660740 (-) True AMCG00016645
AMCG00016644 mRNA downstream 173315 26626707 ~ 26643493 (-) True AMCG00016644
AMCG00016653 mRNA upstream 10868 26833194 ~ 26839113 (-) True AMCG00016653
AMCG00016652 mRNA upstream 50569 26872895 ~ 26886881 (-) True AMCG00016652
AMCG00016657 mRNA upstream 66008 26888334 ~ 26891932 (-) True AMCG00016657
AMCG00016659 mRNA upstream 79050 26901376 ~ 26901744 (-) True AMCG00016659
AMCG00016656 mRNA upstream 118654 26940980 ~ 26946564 (-) True AMCG00016656
TU18445 other downstream 245167 26568669 ~ 26571641 (-) True G14843
TU18448 other downstream 245167 26568669 ~ 26571641 (-) False G14843
TU18407 other downstream 296411 26427339 ~ 26520397 (-) True G14816
TU18405 other downstream 298529 26427339 ~ 26518279 (-) False G14816
TU18278 other downstream 575702 26239082 ~ 26241106 (-) False AMCG00016623
TU18636 other upstream 446494 27268820 ~ 27279334 (-) True AMCG00016671
TU18673 other upstream 547264 27369590 ~ 27370139 (-) True G15026
TU18738 other upstream 579350 27401676 ~ 27403922 (-) True G15067
TU18749 other upstream 602567 27424893 ~ 27428651 (-) True G15076
TU19143 other upstream 1959146 28781472 ~ 28785507 (-) True AMCG00016732

Expression Profile