RNA id: AMCG00016652


Basic Information

Item Value
RNA id AMCG00016652
length 4688
RNA type mRNA
GC content 0.53
exon number 22
gene id AMCG00016652
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26872895 ~ 26886881 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGCAGTGAAAAGAGCATCTGAGGGCGCAGACTTCAGTCAAACGCAACGCAGAGAGCGGAGTAGCGCCAATTCTCAGacAGCTGATTGCTTCTCTGCCATGTCCAGCAGTTAGTTGAGACGGGCCTTGTCGTTTTCCTGCAAGATCGATTCTTGatttctccctccctgccttGGACGGATCACTGCCACAGCCTGAGAGATGAGCACGCTGGACAGGTCCCCGGCCGTGTGGCACCCCCCCGGTCACTCtcgcagcagcagcactgcctCCTCGCGCCACACTCGACAGAACTCCAGGGACTGGGAGGTAATGCAGGACATCCAGAGCTGCAGCAGCGGTGGTGACGTGAGCGTGGAGACGGTGCGGGATGTGGCGTTGCCCGCCAACTACCAGGGCTTCCTGCTGAAGAAGAGGAAGTGGCCGCTGAATGGCTGGCACAAGCGCTATTTCGTGTTGGACAAAGGCATCCTTGGATATGCTAAAACGCCACAAGATATCGCCAAGGGGAAGCTGCATGGCTCCATCGACGTCAGCCTGGCGGTCATGTCCATCAACAAGAAGTCCCGGCGCATAGACCTGGATGCCGGTGACAGCCTGTATCACTTGAAGGTGAAGTCTCCTGAGCTGTTCTACATCTGGGTGACGAAGCTGTGTGCTCACCGCGTGTTCAAGAAGAATGAGGCTGTGCGTCTGCACAAGGAGTTCCTGCGTGCACTTGCCCAGAGCAACGGCCCGATGCCAGACATGGCTGACCTCACCCAGAGCAACGGAGCGCTGCCAGGCATGCCCACCTACAACAGAGCCACCCCCCTGCAGAGCCTGCCCCCAGGGACCCCCATAGTGACCAGCAAGGTTGACGCCTGGCTGCAGCAGACCCAAAACTCTGATTTCTGCTCCCAAGAGCTGGCGCAGTGCCAGGCCGATCTGACCGAGCTGAGCCGCATGGTGCAGAGATTGCAGTCGATGCAGCCCTCGCAGTCCTGGAGCTGCAACGGTGTCAGCATCCAGAACAACACACTGGAGAAACCCCGGAAGAAAGCCAGCAAGATCTGGGGCAACTCGCAGAGCCTGTCCCGAGTGGAGGCCAGTATGGTCTCCTCGGTCCCCAGCATCCCAGACTACGTTCATTCGCAGGCCCCCATGCCCCCAGAGACACACAAGCTGCAGCACAACATCTGCTCCCTGTCCCAGAGAGtGCACACGTCATTGAAGTCTGTGCTGGACACTCTGTATACGGAGCGTGAGCGGCTGCGCCAGGCATGGAGCGGGCCAGACCTGCGCCAGGCCACCTCTGCACAGTTTGCCACGCTGTACAGTACCATGTCTGAGATGGAGATGCAGTCCCACCTGACGCGCGTCCAttccctgtctctgtcctccGATTCCACAGATGAGTCCTTCCGCACCGTCAACCAGTGCCCTCTGTCCATAGCGGGTGAGCGGATGTCCTTGGCGAGCACCCAGTCGTATGCAGAGTATTTTGACGCCAGCGACGTGATTGTGTGTGGGAGCTCGGATGAAAACGAGGCTTCGGACGACTCCTGTCTGAGTGACGTCACCAACAGCAACTCTGACCCTGAGGACTGCCACATATTTGACGATTCCCTGACTCTTGTCCAACTTCCCCCGGTAGTCTCTCGGAACTACAGAGCCAGCCTGTGCATCTCGGGCCCCCGCTGCGCCCCCAAGGACACGGGCCGCCGCAAGACGATCCCTGCGCCCGGTCCTGACAACAGCCACATCGGTCTGTGGAACATCCTGTACAACAACATGGGCAAGGACCTGTCGCGTGTGTCCATGCCCGTGCCGCTGAACGAGCCGTTGTGCTTCCTGCAGCGCCTGTGTGAGGAGCTGGAGTACTGCGAGCTGCTCGACACAGCCAACCGCATAGATGACCCCTATGAGCGCATGGTGTACGTCGCAGCCTTTGCCATCTCCTACTACCTGTTTGGCAGCTCCCGCAACCGCTACAAGCCCTTCAACCCCGTCCTGGGAGAGACCTACGAGTGCCTGCGGGAGGACAAGGGCTTTCGCTATGTGGCCGAGCAGGTCAGCCATCACCCCCCCATCTCTGCCTGTTATGCAGAGTCTGAGAACTTCACATTTTGGCAAGACCAGCGCTGGAAGAACAAGTTCTGGGGCAAATCTGTGGAGGTCATCCCTGTGGGCATGGTGAACATCACGCTGCCCAAGTATGGAGACCACTATGAGTGGAACAAGGTGACCACCTGCATCCACAACATCCTGAGTCCACAGCGCTGGCTGGAGCACTATGGCGAGATACTGATCCGCAACACCAAGGACAGCTCCTGCACCTGCAAGATCACCTTAGTCAAGTCCCGCTACTTCAGCCCCGAGACCAATGAGGTGCGGGGTGTGGTCCTGGACCAGGCAGGCAACACTGTCCATAAATTTGGGGGGTTCTGGCACGAGGGCATCTTCTGTGACACCCTGCCTACACCCCAGTGCATCTGGAAACCACACCCGCTTCCTCCGGATCACATGCAGTATTATGGGTTCTCTTATTTTGCGCGCGAGCTGAATGACGTCACCCCCGAGATGAAGTCACTGCTGCCGCCTACAGACTCCCGCTTCCGGCCAGACCAGAGGCTGCTGGAGAACGGGCATGTAGACGAGGCGGAGAAAAAGAAGGATGAGGtggagcagcagcagagggAGCGGCGGAAGATGATGGAGAAGAAGGGAGAACAACACATCCCACGCTTCTTCAGGAAAATGGTGGATGCCACTGGCAAGGAGACCTGGTTCACCAACGGGACATACTGGAAGGTCCGCAAGGAACCGGGATTCGCCCAAATGGACAACCCGCAGCTGTGGTGAGGAGCTGGAGTGCAGCCTCCTTCCTGGACCTGAGGACTGCCAGCCAGGAGGGTGTTGTATATTTTAGACCtctatattcaaatgtatagaCTATTATAGTGGAAAAATCCAAACCTCATCAGTTGTGAAGACCTTTGGATGTCCAACTTAACTTCTTTGATGCCGAGAAATGTGCGCACACTCCATCACCCATCGCACTGATGAAATTGCTCCGTCTCGCACGGAGCAGAGatggtgtgtgagtgagagacagCCTGGGGAAGGTGTGaaagacaattttatttattttgctcatgGATCTGCCCCAGGATTCCCAGCGTTTCTCCTCCCCTGGTATCGCAGGTGGGAGCAGCACCCAGCCCACTGTGCTGAAGCTGCCTTGACCACTGCAGGCTGTCCGTCTTGAGCTGGACAGAGTTTGGAAACTATTCTGGtggagagggaggaggtgggTGGTGGCTGTAATGTACTACCCTGTCACCCACCACCACAGAGTCCCTCCCAGCTCACCCAACCTCCCTGTCGCAGCCATGAAAGGACGGGCCGCCAGTCGAGGTGAGACTGGAGTGTTTTGTTGCCCTGTTTTGGTgtcctatttttaaatgttttacagaggCTAGTATTTTACAACAAGGGATCATTTTAAGATGctgcaattttcatttttaaatgatttttatgTGTTCATTATGCAATCTAGTAGACTGAACATTTTCCTGTAATATTATCCTAAAGGTCTCTGTCAGAAcccttaattaatcaataaatgagcagttttgttttttgttttagatttttttttttttggtgggttAGGTAGTAATGCCTCCACACTGGAGTTTGCATTACAGGTCAATGTACCAGGAAACCTCTGGTGGGCTATGAACTGAAGCGCACAATGCACAATTCTGAGGGGGGTGGTGACCAGTCATCCTGTTCCCCCTCAAAGTGCTCAGTCGGCACAGTGACTGCTCACAGAGGCATATGTATTGAACTCCTGTACAGCTCTAGTGACTTGCTCAGTGTCTGCTTTGAAAAGCAGTGTGTTCTGTTGAAGCCAATTTAAGgactttttttctgaaaaataacaagtgtgtgtatataacttTAGGGAAACCGAACAGTGTAGTTTGTAATGAATtttatgtgtgcattttgttgtAACTTGTGTTCTTAAATGTAGTCTTGACCATCAATGTCGTTATCCCTTATCCAGCATGTGTGTACAAGAAATGTCCAGTAGAGGGCTCCAAATGATTTGATAAAATACACTAAACTGCCTAAAACTTATTCACCAAAGTTCACttgttttgattgtatttttgccttttctttgttttgatcaCCTGGTTCTGTAACCTCCTCTGCACACATCACATTGGGACACCTGCCCCTGTCACACATGCCTGCAAAGGGTTTCTGCATCTGTAATTGactcctgctgctgcttttcCTAATTCAGGACTCATAGTTTGGCCAAATAAAGGTTTTACCCCCCTACCTCTCACAGTTTCCAGTCACTGCCTCATTTCTGACCACATCATGTTAATATGGGGTGACGAGGTAGGTGGGGGGTGATTAAGTAGGCTTCTGCATGGAAGGGCAACTGGTACTGAGCACAATTGCATTGTTCTTCCAGCAGGTGgcagtgacattttatttttaaactaccaTACTTCCAGGATGTCCGAAGTGCAGCATCTCTCCAGGGGGTTTGTGTGTGACTTCCCTACCCTCTGTGTGGGCTGTGCTGTAAGTAGATGGACTGGAGTGCTCCAGGTTGGCGAGATTCATAGGTTCAAGTCCTGCAAAGCATTATGATTAAATGCTTTGTGAAAGGTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18490 lncRNA downstream 130557 26741085 ~ 26742338 (-) True G14882
TU18464 lncRNA downstream 241020 26626777 ~ 26631875 (-) False AMCG00016644
TU18442 lncRNA downstream 280595 26582526 ~ 26592300 (-) True AMCG00016643
TU18432 lncRNA downstream 349848 26522804 ~ 26523047 (-) True G14832
TU18416 lncRNA downstream 404796 26466325 ~ 26468099 (-) False G14818
TU18569 lncRNA upstream 92277 26979158 ~ 26983486 (-) True G14943
TU18574 lncRNA upstream 108292 26995173 ~ 27003707 (-) False AMCG00016662
TU18637 lncRNA upstream 357085 27243966 ~ 27245247 (-) True G14999
TU18640 lncRNA upstream 376832 27263713 ~ 27265603 (-) True G15001
TU18659 lncRNA upstream 409204 27296085 ~ 27308958 (-) True G15016
AMCG00016653 mRNA downstream 33782 26833194 ~ 26839113 (-) True AMCG00016653
AMCG00016651 mRNA downstream 50569 26816808 ~ 26822326 (-) True AMCG00016651
AMCG00016648 mRNA downstream 123833 26743584 ~ 26749062 (-) True AMCG00016648
AMCG00016649 mRNA downstream 140805 26721787 ~ 26732090 (-) True AMCG00016649
AMCG00016642 mRNA downstream 208594 26662086 ~ 26664301 (-) True AMCG00016642
AMCG00016657 mRNA upstream 1453 26888334 ~ 26891932 (-) True AMCG00016657
AMCG00016659 mRNA upstream 14495 26901376 ~ 26901744 (-) True AMCG00016659
AMCG00016656 mRNA upstream 54099 26940980 ~ 26946564 (-) True AMCG00016656
AMCG00016658 mRNA upstream 80529 26967410 ~ 26974651 (-) True AMCG00016658
AMCG00016662 mRNA upstream 109258 26996139 ~ 27003250 (-) True AMCG00016662
TU18445 other downstream 301254 26568669 ~ 26571641 (-) True G14843
TU18448 other downstream 301254 26568669 ~ 26571641 (-) False G14843
TU18407 other downstream 352498 26427339 ~ 26520397 (-) True G14816
TU18405 other downstream 354616 26427339 ~ 26518279 (-) False G14816
TU18278 other downstream 631789 26239082 ~ 26241106 (-) False AMCG00016623
TU18636 other upstream 381939 27268820 ~ 27279334 (-) True AMCG00016671
TU18673 other upstream 482709 27369590 ~ 27370139 (-) True G15026
TU18738 other upstream 514795 27401676 ~ 27403922 (-) True G15067
TU18749 other upstream 538012 27424893 ~ 27428651 (-) True G15076
TU19143 other upstream 1894591 28781472 ~ 28785507 (-) True AMCG00016732

Expression Profile