RNA id: AMCG00016659


Basic Information

Item Value
RNA id AMCG00016659
length 369
RNA type mRNA
GC content 0.62
exon number 1
gene id AMCG00016659
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26901376 ~ 26901744 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGAGCCACCGCACAGCTGGTGGAAGCTGACCTTCCTGCGCAAGAAGAAATCGGAGGCCAAGGTACTGTACGAGATCCCTGCGGAGTATGCCAGCAACCACAGCTACAAGGACACTGCCGCCCCATCCGGCCCCACGGCCCCCACGCCAACGGCTCCCCCACCACCGGGTGGCGCCGTCACACCTGAGGACAGCCAATACAGCGCACGCTTGGAGAAGATCATGGACAAGACGGCCACCAAGGGCCGGCACGTGAAGGTGTCCCACTCTGGCCGCTtcaaggagaagaagaagatcCGTGCCACGCTGGCTGAGAACCCGAACCTGTTTCCCGAGAGCAACGAGAACCACAAGTCCGGCCCCTAA

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18490 lncRNA downstream 159038 26741085 ~ 26742338 (-) True G14882
TU18464 lncRNA downstream 269501 26626777 ~ 26631875 (-) False AMCG00016644
TU18442 lncRNA downstream 309076 26582526 ~ 26592300 (-) True AMCG00016643
TU18432 lncRNA downstream 378329 26522804 ~ 26523047 (-) True G14832
TU18416 lncRNA downstream 433277 26466325 ~ 26468099 (-) False G14818
TU18569 lncRNA upstream 77414 26979158 ~ 26983486 (-) True G14943
TU18574 lncRNA upstream 93429 26995173 ~ 27003707 (-) False AMCG00016662
TU18637 lncRNA upstream 342222 27243966 ~ 27245247 (-) True G14999
TU18640 lncRNA upstream 361969 27263713 ~ 27265603 (-) True G15001
TU18659 lncRNA upstream 394341 27296085 ~ 27308958 (-) True G15016
AMCG00016657 mRNA downstream 9444 26888334 ~ 26891932 (-) True AMCG00016657
AMCG00016652 mRNA downstream 14495 26872895 ~ 26886881 (-) True AMCG00016652
AMCG00016653 mRNA downstream 62263 26833194 ~ 26839113 (-) True AMCG00016653
AMCG00016651 mRNA downstream 79050 26816808 ~ 26822326 (-) True AMCG00016651
AMCG00016648 mRNA downstream 152314 26743584 ~ 26749062 (-) True AMCG00016648
AMCG00016656 mRNA upstream 39236 26940980 ~ 26946564 (-) True AMCG00016656
AMCG00016658 mRNA upstream 65666 26967410 ~ 26974651 (-) True AMCG00016658
AMCG00016662 mRNA upstream 94395 26996139 ~ 27003250 (-) True AMCG00016662
AMCG00016667 mRNA upstream 286092 27187836 ~ 27194901 (-) True AMCG00016667
AMCG00016664 mRNA upstream 308779 27210523 ~ 27212922 (-) True AMCG00016664
TU18445 other downstream 329735 26568669 ~ 26571641 (-) True G14843
TU18448 other downstream 329735 26568669 ~ 26571641 (-) False G14843
TU18407 other downstream 380979 26427339 ~ 26520397 (-) True G14816
TU18405 other downstream 383097 26427339 ~ 26518279 (-) False G14816
TU18278 other downstream 660270 26239082 ~ 26241106 (-) False AMCG00016623
TU18636 other upstream 367076 27268820 ~ 27279334 (-) True AMCG00016671
TU18673 other upstream 467846 27369590 ~ 27370139 (-) True G15026
TU18738 other upstream 499932 27401676 ~ 27403922 (-) True G15067
TU18749 other upstream 523149 27424893 ~ 27428651 (-) True G15076
TU19143 other upstream 1879728 28781472 ~ 28785507 (-) True AMCG00016732

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1541907 True 1305 TUCP 0.42 2 NC_048580.1 18417615 ~ 18423186 (-)
tiger barb (Puntius tetrazona) TU45989 True 1412 TUCP 0.59 6 NC_056702.1 24306501 ~ 24495178 (-)
mexican tetra (Astyanax mexicanus) TU45989 False 1243 TUCP 0.39 2 NC_035900.1 3783408 ~ 3789192 (-)