RNA id: TU18559


Basic Information

Item Value
RNA id TU18559
length 7083
lncRNA type read_through
GC content 0.45
exon number 2
gene id AMCG00016663
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26966297 ~ 26993948 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTTTATTAATAAACATCAGTGTGAAGTTGCTAAGCTCAAAGTGTGGTTGAAACAATCACAAACAAGCCAAAGTACAAACCAATACCTCCAATAGTGAGGATTCACAGAGGAGAAGTACTGACTGCTTCAGTAGCAGACGGTGAAACCAATCAGTGCGCATCTCAATAGATGTTTTACCTGCtactaaaatgtaattctgatATAAGAgcatagaaataaaaaacaatgtattgacTAGAAACACCTCTGCTATTTTGTTTCGTTCACCATCAAATTGTGTTGGCCTCCTATGAACACACATTCTTATAACACATGCTTTTGGAGAGCAAGTACGTCAATCATTTGATTATTTATCGTATTCATTcgattgaaattaaataaatatacgtATATATCAATACAAATCTCGTTATCTATATAATCTTGAATCTTTTTAATGGGGTGATAACTGATAAAACTTCAGAGTGGGATTATGAGACGAAAAtacggtgtgtgtgtttgtttgcttcctttAAAACACCTCCACACGACCACTTCCGagattcattttaatacaacacGCAGAATCAGGGATCAGATATGATACTATAAAATGCCTTTCTCCCATAAAGCAGGCTGTGGTTTACGGTTTAATTACGCAGGGGCTCATTCTTATTATTGACAGGTGTTCAAATAACGTGtacctatatataatatagcattaaaataaataccaaaacatTATAGTGTGGAGGCTGGCGCCTGGCGCTTTGGTGATTTCCACAGTTCTCAAATGTGTGATCAAATACGAGGCATTTCTTATTGATATTATTGTCAGTAATTACAGGAattcaatgaaaaaataaatataattatagaaCAGTATtagtgttttcttcattttttatcacgatatatatatatatgtatatgtatagtaaCAGTACTTTAGGTTTCcctttttcttgtgtgtgtataatttatttttgctccTTGAAACCTAGGCCAACTTTGCAGATAAACTATGATCTGCAACACAgtcgtgcacacacacacagttaggcGACCTCTGTGGGTCTGCTATAAATCCAAAAAcagcaaatcaaaacacagaacaaaacgAAAATCGCCTTCATTTTAATATCGACCACTTGATCTGTTCCTTCGCCGACTGTAGTACCtgggaaaacacagaaaaaatatttatcaatttacaGACACATTCTGCTGCTCCAACTAgcctactaatactactactaaatatatatatttcacattaagaacataagaaacgagaggagcccattcgccccattgtgctcgtttggtgcccattaataactaagtgatccaaggatcctatccagtctatttttaaatgttcccacattttcagcttcaaccacattaaGCCTGCTATGTCAGTTTATTAGTCAGGTAGATGCCATGCGCAAAAATTAAAGCTCGCTGCGGTGTGGCGATGAGATGCTGCTGGACAATTAGGATCTTCGATATAGAAAGTCCTTAAATCTCAACTGATTTCTGTTCCTCTTAGTTGTTTAAgatataatgttttaacattctttaagcttttaaaaagccatttaggaaaataaatgttctccGCTCTGTTTTAAACACCAAGTCGGGACTATTCAAAGACTGTGGCATTAATAGGAGCGCGGCGGGCTGGTCTTGATCTCTACTGTAAAAGACGAACATGTCGCCACCAGATGTCGCTGCAGGTCACAGAATTAGACTCGGAGGGacccagagagagggagtgagaaagtgaaagTGCTGGGAGTTGGGCTGTAGGAGGCACCACCGGCTCAATTTCACTGGTCTCAGAGACAAAACACCcgtattttaaatatgcagttcCTTTCTCTAGGACCAGGGTGTGAGTCAGAGCCCCCCACCACATAATGTAATATTCCTTATTCCACCCACCCCTTGCTGCCAGCCCAGCACTGAGAGGCCTGCAGAGAAGCAGGGGAGATCACACCGACAGGATCTCTCCGCCGAGATCATGAGTGAACATCCGACCTGAACTGCTCccatgcattttcagttattttcaatgtatttgacccttttgttggtgtgcagtttttgcttttatcacgtttgttttgttgatttgagcacgtttattttaaagttaattgttttagtttttgttaaaatcacaaagattttaaaaattttaagtgattttaaggactGAACTGCTCCCAGTGTCCCACACAGACTGACCCCCCTCccgcaatacacacacacacacatactggcactcacacacatacacacgtgcACACCCTCTGTGACTTACATTGGAAGTCATTGCCAGTTTCTGGGAAAGGTGCTGTGTGGAGTTAGAGCAGAGGGTTAGTGTCAGGGCACAGAGCAGCACTGTCTATTGCTTTGTTGCTGTTCAGTGAGCAGGGTTAACAacagcggcggcggcggcagcaggGTAATCGTCCACACAGAGAGCCGGCTGCAGCTCAGGGACAGACGGGCTCAGTtaaacagatacacagacacctCTGGCTTACACATAATGCACAGAGtgacaagttaaattaaatgaatgaataaagcaATCAGCCTTTGCAAAGCAAGCGTAAAGTGACAGGTGGTGTCAGTGCACTGTGGTGTCTACTACACAACACAAGCTGGGCACTGTCTGTaggtgtgtacagtgtgttctTGCGCTTGCCAAGTTGCCCTGGGTGTGAGCCAGTGGTGGGGGGCGGGGCTTACCTGTGCCACACTCTGCTCCGACAGTGGGCTGTCTTCTGCCTGGGGGGGGAGGAAAGGAAAGAGGATGTCAGTCCTCTTGAGAGCTAACAGCACGGGTCTCCGCCCAAGCCTGAGGGAAAATTCCCTGAGAGCTTTGTCACAGCTTTCAATGCCaccatgcaaaacaaacatgagaaaaccaaacacacatgcacaaaaaactaaactcaaACCATAAGGTTGCACTCCACTACAGCTAGTACAGGCATCTCAGATCCACAGGGGAGCCTGAGAGAGGCGTTGATGtttcacacacaatcacaaacacagCCCTGCTCTGTGTCACAGTTTAGGCACTGAACTGCACAGTCAGGGTGGGCAGTGCAACAGGGCACTGTAACACAGAGCTCTGTGGCTGTTCTGGCAGGACTGGTCCAGTGTGTTGGGCCATTGCCAGCAGCAAACAGGATCAGAGTCACAGCACACATCACTGGGGGAGGGACAGGAATTGAAAATGCAGCcaaaagatcaaaacaaaactcagaaatgaacacacacagtcttacacactcacacacactttcacactgacactcactccctccctctcaccggCACTCTTACGCACTCTCACCCACTCTCTCTGGACTCTAAAAATAATTCAGCCCTGCGAGAATCCTCTCTGTCACCATGGACAAAATGGCAGGCGCATcgaacaaaaacacacatgccCACTACCCAACTCCATGCTCATGCAGGATATGAATTGTCTCTGGACGCACCACTGTGCAGCGGGCAGCAGCAACTCTACGTCTTTTCCAAACTACCAAACATCCAACATAAATCCAGAGCACACCAATCCACACAGAGCAGGGGGGTGGAGCTGTGCCATGCAGTGCAGCGATTCAATCTCATGCAAGTTACCTGAGCTgggttttctctttctttctctcctacTCCCCCTCTCttgttttctctccctctctctctcacaccctctccctctctctctctctctgtccctctctctgtctagGTACTCAGGTTCCTGTCTCCCTGGGCCTCAGTGTTCCCAGTGATATAGTCAAAGAGAACGAAGCCATAGGCCGGCTCAGACAGGGcctgggagagggggagagggagagagggagaaatggagggaggaggaggaggaggaggagaaaagagTAAGAAGTGTAAGAGAGGATATatacgctcacacacacacacacacaccagggtTTCCCCCAGAAAATTGCATAGGCAAGGTGGTCTGTTTCAGCTCCACTATGGACACAGGGCACACGGCAGGCATCACTCTCCCAGCCAACACTGGGGCTCAATTCACACCTCCCCtcaaaccccctcccccaaagaCTCTCACCTGCTGAGCCTAGGGTGCTGCTGAGTGAAGGTGCCCAAATGTGCATCAGCATTTAGTGAGGACTTTAAGTTCAGATTTTAGGATTTAAAGTAACATTAAGACCTGACAGAGACATTCCCCTCCGACATGCCTCGGCCAAGGTGCTGTGGAGGTGTCGTTCATTTCTACTCCTGTGAAAGCGGTCTGCTCTGAAATGCATCTCAGCAAGCCCCCCTCCGTCCCCCATCCTCTTACCCTGAAATTGACCTTCTGAATGACCTGCAGGGGGTCGCTCTCCAGAATCACCCTGCAAcagaacaacacaacagtgacatCACAGACATCCGTACTGTGATTTTCACAAGCTTGTTACTGACATTACATTCATAAGCAATAAGAATCTCTCGCTTCCTCCCCCTTTTCgcttttcctctctcccttttactttccttctctctccccgtctctttttctctgtcaaTCGTCCACCTCCTTCTCCCTCGCCCCCAAAATCACccacttcctctccctctctccctcttgcagccctcttcctccttccactccctctctcaccctccgTCAATGATCTCGTCCACCACGAGGAACGCTCCATCCATGTTGTCCAGCAGACTCCTCTTCTCCACATTCTTCCTGTGggcagacggacagacagagaggtCAGTcagggtgcgtgtgtgtgtgtGGGTGTGTTATCCGAGCAGACTGCtttggacacaaacacacacacacgcacacactcacctaCACACATTAAAGTAAACGTTTACTGTAGCGTTTCTGTTATTATTGTAGCATCGCGTGTTGTATTGCTGAGCAGGGCAGGTTCCTCACTGTCATGTGTTGCGTTGGAGTGTGTTGTGATCGGTCCCCTGGCTGTGTGGAAGGTGGTAGGTTAGGGTAGATTGGTTTGGCTCTGCTTTGTAAAAGACATAAATAGTTCTCTTTAGGGTCCTGAGTGTAGATGTTGTCCCAGTTTGCTAGTCTGTTTCCAGTGTtactgccccccctcccctcccttaTTTACGGCACTGCAGAAAAGCCAAcacctctcccctccccctctcccctctgtctGCAGTACATTGGAGCCTGTGCCTTATACGAGtcaacacacactgacacattttaTGTTACTTTGGTGTTTTACTGCAAACTGTATCTGTGCACCTTTTAATATTGTAGAAGgcgtccctctctctctgccaagtCCCGCTTTCTGGCTCAGCAGTGCCGGTtctactactgttactactcCAGCTGACGCTACTCCTGCTGCTGTTGCCCTGCAGAGTGGACTACGAGCGACCGAAGCAGCAGGCTGTATCGCCTCCGGATGGCTTGCGCGATCCTGCTGTAGAGCACAAGATGAATACTGCGGCTGCAGCACATTAGAGCAAACTCAACCGGAGTTACTGctcattcctcctcctctctaTAGCGGGCGCTCCCGCGGGCGCATGTGGAtgagaaggggtgggggggtgcgtGTCCTCTCCCACTGGGCGTGTATTTGATGGAACTGCCACTGCATCTTGGCGTTCTGGAAGATGGCAGTGATTGGCCACAGAAGTGGTGTGCAATGGACCGGGTCTGGCTGAGAAGTACGATGTACAAACCCACTCTACAACAACTTTTGATTGAGGTCACtttatgatcattattaatatttattttatcgtTATTTACGTTCTGTTTTGGGCAGCATTACCCGCGAGCACTTGGATAGGATATGTAGCGCCATGTAACCATCAGTCTTGACAATGATCTTTTGGGTGAAATCTGCCTGCTCTCGGGTTTAGACAAGGGCTGATCATGCACGGGCTGACAACTAATCTAAATTAGAAACCATGGATACATAATGGGGCAAATCCAGCTTTAGGACCCCCACAGCATGTACTGAAGTGTCCCAGACCCCTCCTGGGAGGGATCCCTGCTGCGGCCTCTCCACCACTAGCCTGGATTCAAATATGAAAACGCTGTATTTTAGTGATCAATCtattaaaggtaaaaaaaaaaaaaaagtaactttaATTTTGACTTCTTGGTGAATTCTTCTATTCTGTATTCTGATTTGGAGAGGGGAGGTGGAGGGTAGGATGACAAAAACACTGGAATTTAAGATGTATAGGGTTTGAAGTTTTATTACCAAAACAAGTCACTGAAGGAGGCTGCGGTTGCTCGGCTGTAGGTTTGATTTTTCTCTGCTTGAAAATGATACACTGGGATTCCACCTGCATATTCCAAAGCACATTCTTTAGGAAGCTCctacatttgctttttaaaccaCATTTTGTTCTCCTTTACGTGTGTGTTCTGTAAATATTTCgatgtttgaaatgtgtgtctgtactgttttctttcctgtctGTGTAGAGGACTTCAGTGTGTTGTCttgggttttttattttgctctaattttcatttttatttggttgtatAATTTTTTGGTTTACTTTTTGAACATTTGCTGGCAATCTGGGATTCTTCTTATACCggataataaaatgtttttattttcaactgcgactgttttttaaaatgtatttatttttaaaaggcaatcCTTTGTCCAAATGCAAAGCACACCTAATTATACCTTCGCCAGACTTGCAAGCAGACATCTTGTAGGAGTTCTCACAGGgcaggttttattttggttaGCGCCTCTATCCATGCCCACACAGGATCATTAAATCTGAGTGTTGTGTCTGTATACTTACACACCTAGTGTCACGGCCTCCTGAGCTATTAGAAAGCCGAGACCCATAAgggcaggggtggctaaccctgatACTGAAGAGTTGCAATCCTGCAgattttccaggtctctctaaattaccaatcatTGGCTACCTTGAATGGGatattttgcttaattaagacccacaattggttcaattaagcagttaatgatctgGTTAGAACACAACCCTGTAGGCCccgcggctctccaggaccagggttagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18391 lncRNA upstream 250496 26715569 ~ 26715801 (+) True G14803
TU18390 lncRNA upstream 253168 26712231 ~ 26713129 (+) True G14802
TU18388 lncRNA upstream 261093 26704997 ~ 26705204 (+) True G14800
TU18377 lncRNA upstream 308979 26589606 ~ 26657318 (+) False G14791
TU18381 lncRNA upstream 333105 26626707 ~ 26633192 (+) True G14793
TU18626 lncRNA downstream 268942 27262890 ~ 27274297 (+) True G14992
TU18644 lncRNA downstream 287476 27281424 ~ 27282569 (+) True G15005
TU18672 lncRNA downstream 375641 27369589 ~ 27370138 (+) True G15025
TU18707 lncRNA downstream 548540 27542488 ~ 27544996 (+) False AMCG00016683
TU18718 lncRNA downstream 605862 27599810 ~ 27604875 (+) False AMCG00016691
AMCG00016655 mRNA upstream 47529 26911968 ~ 26918768 (+) True AMCG00016655
AMCG00016654 mRNA upstream 68763 26893279 ~ 26897534 (+) True AMCG00016654
AMCG00016650 mRNA upstream 97116 26857718 ~ 26869181 (+) True AMCG00016650
AMCG00016647 mRNA upstream 266096 26683642 ~ 26700201 (+) True AMCG00016647
AMCG00016636 mRNA upstream 298617 26665445 ~ 26667680 (+) True AMCG00016636
AMCG00016660 mRNA downstream 5319 26999267 ~ 27009741 (+) True AMCG00016660
AMCG00016668 mRNA downstream 364830 27358778 ~ 27364948 (+) True AMCG00016668
AMCG00016677 mRNA downstream 400010 27393958 ~ 27403922 (+) True AMCG00016677
AMCG00016680 mRNA downstream 411460 27405408 ~ 27405728 (+) True AMCG00016680
AMCG00016676 mRNA downstream 412783 27406731 ~ 27409921 (+) True AMCG00016676
TU18379 other upstream 308872 26605526 ~ 26657425 (+) False AMCG00016635
TU18348 other upstream 533941 26427339 ~ 26432356 (+) True AMCG00016633
TU18353 other upstream 536970 26428723 ~ 26429327 (+) False AMCG00016633
TU18257 other upstream 677075 26285863 ~ 26289222 (+) False AMCG00016625
TU18064 other upstream 1016121 25940528 ~ 25950176 (+) False AMCG00016607
TU18699 other downstream 552046 27545994 ~ 27547609 (+) False AMCG00016683
TU18716 other downstream 594531 27588479 ~ 27599592 (+) False AMCG00016691
TU18717 other downstream 594531 27588479 ~ 27598648 (+) False AMCG00016691
TU18724 other downstream 619157 27613105 ~ 27619919 (+) False AMCG00016690
TU18835 other downstream 835320 27829268 ~ 27831694 (+) True AMCG00016705

Expression Profile