RNA id: AMCG00016666


Basic Information

Item Value
RNA id AMCG00016666
length 438
RNA type mRNA
GC content 0.58
exon number 1
gene id AMCG00016666
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27247560 ~ 27247997 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCATGAGTTCCTTTTTGATCAACTCCAACTATGTGGATCCGAAGTTTCCACCCTGCGAGGAATATTCTCAGAACGACTACCTACCCAGCCACTCTCCGGATTACTACAGTGCACAGAGGCGAGAGCCTGCGTTTCAGCATGAGGCGATGTACCACCAGCGGTCGGGCTGTACCGACCCTGCTTACTCTTCCTGCCACGGTCCCGGGCAGCCCGCAGTGGTCATGTCCCCCCGAGGTCACGTCCTTTCACAGCCCGGGCTCCCGAACCCCCTGCCCGAGCCGAACCACCACTGCGACTCCGCCACCCCGAGTCCCCCTCCTGCTTGCGGCCAGAACTCCGTGAACCAAAGCACTTCTTCGTCCAGTTCATGCAAGGAGCCCGTAGTTTACCCCTGGATGAAGAAAGTCCACGTAAACATCGGTAAGTGCAGCTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18637 lncRNA downstream 2313 27243966 ~ 27245247 (-) True G14999
TU18574 lncRNA downstream 243853 26995173 ~ 27003707 (-) False AMCG00016662
TU18569 lncRNA downstream 264074 26979158 ~ 26983486 (-) True G14943
TU18490 lncRNA downstream 505222 26741085 ~ 26742338 (-) True G14882
TU18464 lncRNA downstream 615685 26626777 ~ 26631875 (-) False AMCG00016644
TU18640 lncRNA upstream 15716 27263713 ~ 27265603 (-) True G15001
TU18659 lncRNA upstream 48088 27296085 ~ 27308958 (-) True G15016
TU18737 lncRNA upstream 147122 27395119 ~ 27398583 (-) True G15066
TU18742 lncRNA upstream 165003 27413000 ~ 27413229 (-) True G15071
TU18744 lncRNA upstream 167656 27415653 ~ 27415892 (-) True G15073
AMCG00016665 mRNA downstream 27836 27217458 ~ 27219724 (-) True AMCG00016665
AMCG00016664 mRNA downstream 34638 27210523 ~ 27212922 (-) True AMCG00016664
AMCG00016667 mRNA downstream 52659 27187836 ~ 27194901 (-) True AMCG00016667
AMCG00016662 mRNA downstream 244310 26996139 ~ 27003250 (-) True AMCG00016662
AMCG00016658 mRNA downstream 272909 26967410 ~ 26974651 (-) True AMCG00016658
AMCG00016671 mRNA upstream 17890 27265887 ~ 27272025 (-) False AMCG00016671
AMCG00016674 mRNA upstream 38216 27286213 ~ 27286461 (-) True AMCG00016674
AMCG00016673 mRNA upstream 38877 27286874 ~ 27290861 (-) True AMCG00016673
AMCG00016672 mRNA upstream 51606 27299603 ~ 27313173 (-) True AMCG00016672
AMCG00016669 mRNA upstream 90010 27338007 ~ 27339593 (-) True AMCG00016669
TU18445 other downstream 675919 26568669 ~ 26571641 (-) True G14843
TU18448 other downstream 675919 26568669 ~ 26571641 (-) False G14843
TU18407 other downstream 727163 26427339 ~ 26520397 (-) True G14816
TU18405 other downstream 729281 26427339 ~ 26518279 (-) False G14816
TU18278 other downstream 1006454 26239082 ~ 26241106 (-) False AMCG00016623
TU18636 other upstream 20823 27268820 ~ 27279334 (-) True AMCG00016671
TU18673 other upstream 121593 27369590 ~ 27370139 (-) True G15026
TU18738 other upstream 153679 27401676 ~ 27403922 (-) True G15067
TU18749 other upstream 176896 27424893 ~ 27428651 (-) True G15076
TU19143 other upstream 1533475 28781472 ~ 28785507 (-) True AMCG00016732

Expression Profile