RNA id: TU18636


Basic Information

Item Value
RNA id TU18636
length 1714
RNA type TUCP
GC content 0.41
exon number 3
gene id AMCG00016671
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27265887 ~ 27279334 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCACCTTGTGTAGCAACACTGTCCTCCTTAAAGGTTCTTGgctctttttcatttatataaataaaaaacataactttGATGAGTTCCTCGGCGCCTGCTAGAGACAGATATAGCAGGCTAGCAGTATTCTCGCTCGCCTATGCTAATGTGGCCGGGTTTGATTGGGATTTCCGCAGCAATGGAGGGGGGACGTGAAATCTGGGCACGATGGAGAACTGATCTCATTTTTCATATAGGGATCCTTCTCGCCTTTACTAATGTAAATGACAGAGGAGGAAGCAGCGACAAGCAGCGTCAGAGTTGCCGCTTCAACACTAATGGCTGGACAGACTGGAGCAACAAGAATGTCAAAgcgaaaacaaaatcacaagtCCTGGTGTGCGAGTCCTGAGACTGAGTGAAGGATGATCCTCACAGCAGGCTAACGGTGCCTACGGCCGGGCCAACACAGCCGGAGCCTGTGACTACGCAGCGGCCAGTTTTTACCGAGAGAAGGACCCGGCGTGCGCGCTGTCCAGCCTGGAGGAGCACTCTCTCGGGCTCAGCCAGGAGCAGCGCAAGACAGACTGCTCGgggcagaataaaaacatattcgCTGAAAGTGACGACCAGAAGACATCCGCTCCCGTTTACCCCTGGATGCAGCGCATGAACTCCTGCAACGGGTCGGTCTTCGGCAGCACCGGCCGCAGGGGCCGGCAGACCTACACACGCTACCAGACCctggagctggagaaggagTTCCACTTTAACAGGTATCTGACCCGGCGACGTCGCATCGAGATTGCGCACGCACTGTGCCTGACGGAACGACAGATTAAGATTTGGTTCCAGAACCGCAGGATGAAGtggaaaaaagagaacaaactGATCAACTCTTCACAAACCAGcggagaagaggaggaagaaaagagGACAGAATAACGCAGTGACAAAGAAACGTCAAATACGCAGATACCTTTTCTGCGCCATTCGAATCATCAATTCTAAAGacttgtttatgtttatattttagttttgaatttacactttttattatttttgttttatttttgctgttttatttttcttgtttaattttattttattggtaaatTTGCACCGGTGAAGTTGTTTAGTAATTTCGTAGTAGCATTCCAGACGATCACCTAACTTCTATTTTTtacttgttattgttgttgtaattattattattattattattattattattattattattattattattattattattgttactgttactgttattgttattattattgatgttgttgttattattgttattttaatttcattgtattaCGGGCAACCGAACTACCTGTGTATCTGGTCGCTTTCCCTGAGTTTAGCATTTGCCTCTATGACTTAAATGACTCTGTTTAaggaaactgtttaaaataaatgtcatattcgtgttcatatttaaactctgtataaaacaaacacgAAACAAAGTAATTCCCTGCACGGTGGATTTATGTCTTTCTTTTGTAAGTTAAATACCCGGGATCCAAATATGTGAGTTGTTTTATAGTTTAAGGGGGAAATGAATCTACTGAAAAAATAGTACTACCTAGGCTGgctaaaaaaaagtttatattttattaattttgtacgTGGTTGTGTTTGTAGTTTTGTCAAAAAAGGTATCTAATGGAGGaatcattcaataaaaaataatattgtctcGAATTGCTTTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18640 lncRNA downstream 3217 27263713 ~ 27265603 (-) True G15001
TU18637 lncRNA downstream 23573 27243966 ~ 27245247 (-) True G14999
TU18574 lncRNA downstream 265113 26995173 ~ 27003707 (-) False AMCG00016662
TU18569 lncRNA downstream 285334 26979158 ~ 26983486 (-) True G14943
TU18490 lncRNA downstream 526482 26741085 ~ 26742338 (-) True G14882
TU18659 lncRNA upstream 16751 27296085 ~ 27308958 (-) True G15016
TU18737 lncRNA upstream 115785 27395119 ~ 27398583 (-) True G15066
TU18742 lncRNA upstream 133666 27413000 ~ 27413229 (-) True G15071
TU18744 lncRNA upstream 136319 27415653 ~ 27415892 (-) True G15073
TU18745 lncRNA upstream 136915 27416249 ~ 27416539 (-) True G15074
AMCG00016666 mRNA downstream 20823 27247560 ~ 27247997 (-) True AMCG00016666
AMCG00016665 mRNA downstream 49096 27217458 ~ 27219724 (-) True AMCG00016665
AMCG00016664 mRNA downstream 55898 27210523 ~ 27212922 (-) True AMCG00016664
AMCG00016667 mRNA downstream 73919 27187836 ~ 27194901 (-) True AMCG00016667
AMCG00016662 mRNA downstream 265570 26996139 ~ 27003250 (-) True AMCG00016662
AMCG00016674 mRNA upstream 6879 27286213 ~ 27286461 (-) True AMCG00016674
AMCG00016673 mRNA upstream 7540 27286874 ~ 27290861 (-) True AMCG00016673
AMCG00016672 mRNA upstream 20269 27299603 ~ 27313173 (-) True AMCG00016672
AMCG00016669 mRNA upstream 58673 27338007 ~ 27339593 (-) True AMCG00016669
AMCG00016670 mRNA upstream 91645 27370979 ~ 27375700 (-) True AMCG00016670
TU18445 other downstream 697179 26568669 ~ 26571641 (-) True G14843
TU18448 other downstream 697179 26568669 ~ 26571641 (-) False G14843
TU18407 other downstream 748423 26427339 ~ 26520397 (-) True G14816
TU18405 other downstream 750541 26427339 ~ 26518279 (-) False G14816
TU18278 other downstream 1027714 26239082 ~ 26241106 (-) False AMCG00016623
TU18673 other upstream 90256 27369590 ~ 27370139 (-) True G15026
TU18738 other upstream 122342 27401676 ~ 27403922 (-) True G15067
TU18749 other upstream 145559 27424893 ~ 27428651 (-) True G15076
TU19143 other upstream 1502138 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 2922125 30201459 ~ 30202351 (-) True G15706

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00049955 True 989 mRNA 0.46 2 NC_007114.7 23703704 ~ 23705746 (+)
grasscarp (Ctenopharyngodon idella) CI01000034_01670204_01671915.mRNA True 1008 mRNA 0.47 2 CI01000034 1669903 ~ 1671935 (-)