RNA id: AMCG00016673


Basic Information

Item Value
RNA id AMCG00016673
length 912
RNA type mRNA
GC content 0.46
exon number 2
gene id AMCG00016673
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27286874 ~ 27290861 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tctctctctctctctctctctctctctctccctcttcctttctctttttctccctttttcattctctcactctctccataTCACAAGCGCGCAGTGCAGTGTCCGTGTGGAAATGCCGAAGCCAATGGGATGAGGATGCGATAATAGATGCAAATTATCGTGAAAAGACACTGCAAAATATGAAACAAGTCATTTGCGACGGAGTAAATCACAGAAAACTGTTTATGAACTGGCACCCCTTACTGGAATTGTAATGCAGGGACACTTGAGTAGCAGAGATTTTATGGAAGTCGGCGTGATAGTGGCTTGAAATTTTAAAAGGGTgcttaaaattaatacattaaaaaagataCTGGGAATCCTTGAGTGAGGGTTCTGCAAACCCCGAGAAAAAACGCGGTGCTCTTCTTGTTCCTCATATGAGAACCTGCGGCTCTTAAAGAcgaaacaaacaacagcaacaacaacaaaaagatgaGCTCATATTTTGTCAACTCTCTTTTCTCCAAATACAAAAGTGGCGATTCTCTACGTCCCAATTATTACGAGTGTGGGTTTGCACAAGACCTCGGAAGTAGACCCACTGTTGTTTATGGACCTGGTACCGGTGGAACTTTTCAACACCCATCTCAGATTCAGGAGTTTTACCACCACGGCGCTTCCACCCTCTCCACGACGCCTTACCAACAGAATCCCTGCGCCGTGACCTGCCACGGAGAGCCGGGCAATTTCTATGGATACGACGCTCTGCAAAGGCAAACGCTTTTCGGGACTCAAGATACAGATCTAGTCCAGTACAGCGACTGCAAGCTGGCAGCGAACAGCATTGGGGAGGAGACAGAAAGCACAGAGCAGAGCCCCTCTCCCACACAACTCTTCCCATGGATGAGACCCCAAGGTTACGTAACgtaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09308 HOX_8; homeobox protein HoxB/C/D8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18640 lncRNA downstream 21271 27263713 ~ 27265603 (-) True G15001
TU18637 lncRNA downstream 41627 27243966 ~ 27245247 (-) True G14999
TU18574 lncRNA downstream 283167 26995173 ~ 27003707 (-) False AMCG00016662
TU18569 lncRNA downstream 303388 26979158 ~ 26983486 (-) True G14943
TU18490 lncRNA downstream 544536 26741085 ~ 26742338 (-) True G14882
TU18659 lncRNA upstream 5224 27296085 ~ 27308958 (-) True G15016
TU18737 lncRNA upstream 104258 27395119 ~ 27398583 (-) True G15066
TU18742 lncRNA upstream 122139 27413000 ~ 27413229 (-) True G15071
TU18744 lncRNA upstream 124792 27415653 ~ 27415892 (-) True G15073
TU18745 lncRNA upstream 125388 27416249 ~ 27416539 (-) True G15074
AMCG00016674 mRNA downstream 413 27286213 ~ 27286461 (-) True AMCG00016674
AMCG00016671 mRNA downstream 14849 27265887 ~ 27272025 (-) False AMCG00016671
AMCG00016666 mRNA downstream 38877 27247560 ~ 27247997 (-) True AMCG00016666
AMCG00016665 mRNA downstream 67150 27217458 ~ 27219724 (-) True AMCG00016665
AMCG00016664 mRNA downstream 73952 27210523 ~ 27212922 (-) True AMCG00016664
AMCG00016672 mRNA upstream 8742 27299603 ~ 27313173 (-) True AMCG00016672
AMCG00016669 mRNA upstream 47146 27338007 ~ 27339593 (-) True AMCG00016669
AMCG00016670 mRNA upstream 80118 27370979 ~ 27375700 (-) True AMCG00016670
AMCG00016675 mRNA upstream 85104 27375965 ~ 27381088 (-) True AMCG00016675
AMCG00016681 mRNA upstream 139241 27430102 ~ 27433860 (-) True AMCG00016681
TU18636 other downstream 7540 27268820 ~ 27279334 (-) True AMCG00016671
TU18445 other downstream 715233 26568669 ~ 26571641 (-) True G14843
TU18448 other downstream 715233 26568669 ~ 26571641 (-) False G14843
TU18407 other downstream 766477 26427339 ~ 26520397 (-) True G14816
TU18405 other downstream 768595 26427339 ~ 26518279 (-) False G14816
TU18673 other upstream 78729 27369590 ~ 27370139 (-) True G15026
TU18738 other upstream 110815 27401676 ~ 27403922 (-) True G15067
TU18749 other upstream 134032 27424893 ~ 27428651 (-) True G15076
TU19143 other upstream 1490611 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 2910598 30201459 ~ 30202351 (-) True G15706

Expression Profile