RNA id: AMCG00016675


Basic Information

Item Value
RNA id AMCG00016675
length 864
RNA type mRNA
GC content 0.62
exon number 6
gene id AMCG00016675
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27375965 ~ 27381088 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGGGGCGACAGCGACAGCCAGGCTGAAACCTGCGAGCCCCAGCAGCAGCCAAGCACCGCTGATGgcaagaggaggaagaggaggaggaagaggtaTGCAGACAATGCTGGGCCTGCTCTATTGGGCCCAGTCCGTCCCAGCTGGGGCGGGGCAGGGTGGAGAGACAGCGGGCGGCGCCGTGCCTGACCGGCAGCCTCGGCTCCTCGGGTTACAGTACCTGTTCATAAAAGGGGCCTGGCGGAGCGGGACGCCCTCAGCAGAACAGACGATGAAAGAGCGTCACCCCAGAGAGGGGGGCACTCTGCTCTTAATGAGCAGAGCTAGAGCCTCCCCCCCAGCAGCTGCTGCAGTGACCCGGTGGCAAGAATCCCTCTGCAGTGTGCTGGGGGTCCAGAGAGTGGGGGGCCTCATGGGGAGTGGGTTGGTGCGCCGGGCAGCCAGGCGGTATGGGCTGCGGGAGGCAGGGGAAGGGGAGGACTGGACTCTGTACTGGACAGACTGCTCCGTGTCTCTGGACCGCGTCATGGACATGAAGCGCTACCAGAAGATCAACCACTTCCCTGGCATGAGTGAGATCTGCAGGAAGGACCTGCTGGCCAGGAACATGAACAGGATGCTGAAGCTCTTCCCCAAGGAATACAACATCTTCCCACGCACCTGGTGCCTGCCTGCCGATTACAGTGACTTCCAGGCCTACAGCCGTGCCAAGAAGCACAAGTCGTACATCTGCAAGCCGGACTCGGGCTGCCAGGGCCGCGGCATCTTCATCACACGCTCCGCAAAGGACGTCCGGCCCGGGGAGGACATGATCTGCCAGGTGTACATCTCCCGGTCAAACAGCATCGTACACATGCTTTAG

Function

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0018095 protein polyglutamylation biological_process
GO:0035082 axoneme assembly biological_process
GO:0036064 ciliary basal body cellular_component
GO:0005737 cytoplasm cellular_component
GO:0015631 tubulin binding molecular_function
GO:0070740 tubulin-glutamic acid ligase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18659 lncRNA downstream 67007 27296085 ~ 27308958 (-) True G15016
TU18640 lncRNA downstream 110362 27263713 ~ 27265603 (-) True G15001
TU18637 lncRNA downstream 130718 27243966 ~ 27245247 (-) True G14999
TU18574 lncRNA downstream 372258 26995173 ~ 27003707 (-) False AMCG00016662
TU18569 lncRNA downstream 392479 26979158 ~ 26983486 (-) True G14943
TU18737 lncRNA upstream 14031 27395119 ~ 27398583 (-) True G15066
TU18742 lncRNA upstream 31912 27413000 ~ 27413229 (-) True G15071
TU18744 lncRNA upstream 34565 27415653 ~ 27415892 (-) True G15073
TU18745 lncRNA upstream 35161 27416249 ~ 27416539 (-) True G15074
TU18746 lncRNA upstream 43466 27424554 ~ 27424821 (-) True G15075
AMCG00016670 mRNA downstream 265 27370979 ~ 27375700 (-) True AMCG00016670
AMCG00016669 mRNA downstream 36372 27338007 ~ 27339593 (-) True AMCG00016669
AMCG00016672 mRNA downstream 62792 27299603 ~ 27313173 (-) True AMCG00016672
AMCG00016673 mRNA downstream 85104 27286874 ~ 27290861 (-) True AMCG00016673
AMCG00016674 mRNA downstream 89504 27286213 ~ 27286461 (-) True AMCG00016674
AMCG00016681 mRNA upstream 49014 27430102 ~ 27433860 (-) True AMCG00016681
AMCG00016688 mRNA upstream 128557 27509645 ~ 27516973 (-) True AMCG00016688
AMCG00016692 mRNA upstream 262551 27643639 ~ 27650849 (-) True AMCG00016692
AMCG00016693 mRNA upstream 274660 27655748 ~ 27669412 (-) True AMCG00016693
AMCG00016694 mRNA upstream 319924 27701012 ~ 27707529 (-) True AMCG00016694
TU18673 other downstream 5826 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 96631 27268820 ~ 27279334 (-) True AMCG00016671
TU18445 other downstream 804324 26568669 ~ 26571641 (-) True G14843
TU18448 other downstream 804324 26568669 ~ 26571641 (-) False G14843
TU18407 other downstream 855568 26427339 ~ 26520397 (-) True G14816
TU18738 other upstream 20588 27401676 ~ 27403922 (-) True G15067
TU18749 other upstream 43805 27424893 ~ 27428651 (-) True G15076
TU19143 other upstream 1400384 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 2820371 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 3145204 30526292 ~ 30529500 (-) True G15787

Expression Profile