RNA id: TU18699



Basic Information


Item Value
RNA id TU18699
length 755
RNA type TUCP
GC content 0.43
exon number 4
gene id AMCG00016683
representative False

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27542486 ~ 27553120 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GAGGACGAGGTGGACGAGGCGGATGAGGTGGAGGGAGAAGGACGGAGCAAGGAGGTGAAATCGGAGGAGAAGGGGGACCTGGCAGGAGAGAGGCAGAGTGGGGATGGACAGgAGAGCACAGATGATACGGAGAACAAGTCCGGCAGCAATACGGGTAAAAAGTTGGACGATGACGAGGATCGGAAGAACCCGGCCTACATCCCACGCAAGGGTCTGTTCTTCGAGCACGATGTCCGTGGCCAGGCGCAGGACGACGACATCCGGCCAAAGGGGCGCCACAGGAAGCTGTGGAAGGACGAGGGACGCTGGGTACATGACAAGTTCCGGGAGGACGAACAGGCACCCAAGTCCCGCGACGAGCTGATCGCCATGTATGGCTACGACATCCGCAACGCCAATGGCCCCTCAGATAGCCGGGGCTCCCGCTCCCGCAAGCCCAGGTACGGCAGTCCACCCGGGCGGGACCGCAGGTGGCGAGACGGGGAAAAGCCCAGTCGGTCATCATGGCACGGAGGTGTGAACAACACCCCCCCAGCGGTCTCTACACAGCCTGTGGCCCCCGCCTCCTCAGGCCCCGCAGTGCGGAGTCATGTCAGCAGCAGGAACTCAGCGGGAGGCTCAGGTCGCGTGGCCCCGCCTCCCCAGCCACGCAGCTTCCAGAACAGCCGGCCGCCAGCCTCCTACCGGGAAGGCCGCACAAACTATAAACTTGCGGACGATGGCAGCCACCACCACTACGGGGGCGGAGGGTACCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU18707 lncRNA upstream 998 27542488 ~ 27544996 (+) False AMCG00016683
TU18672 lncRNA upstream 175856 27369589 ~ 27370138 (+) True G15025
TU18644 lncRNA upstream 263425 27281424 ~ 27282569 (+) True G15005
TU18626 lncRNA upstream 271697 27262890 ~ 27274297 (+) True G14992
TU18559 lncRNA upstream 552046 26966297 ~ 26993948 (+) True AMCG00016663
TU18718 lncRNA downstream 52201 27599810 ~ 27604875 (+) False AMCG00016691
TU18827 lncRNA downstream 249940 27797549 ~ 27799115 (+) False AMCG00016699
TU18859 lncRNA downstream 288904 27836513 ~ 27839103 (+) True AMCG00016706
TU18885 lncRNA downstream 444453 27992062 ~ 27992282 (+) False AMCG00016707
TU18886 lncRNA downstream 444979 27992588 ~ 27992792 (+) False AMCG00016707
AMCG00016685 mRNA upstream 7271 27528826 ~ 27538723 (+) True AMCG00016685
AMCG00016684 mRNA upstream 37758 27505189 ~ 27508236 (+) True AMCG00016684
AMCG00016686 mRNA upstream 49649 27484633 ~ 27496345 (+) True AMCG00016686
AMCG00016682 mRNA upstream 93995 27450004 ~ 27451999 (+) True AMCG00016682
AMCG00016679 mRNA upstream 118960 27425680 ~ 27427034 (+) True AMCG00016679
AMCG00016687 mRNA downstream 28924 27576533 ~ 27584981 (+) True AMCG00016687
AMCG00016691 mRNA downstream 43034 27590643 ~ 27604879 (+) True AMCG00016691
AMCG00016689 mRNA downstream 59607 27607216 ~ 27610772 (+) True AMCG00016689
AMCG00016690 mRNA downstream 65692 27613301 ~ 27626090 (+) True AMCG00016690
AMCG00016696 mRNA downstream 216965 27764574 ~ 27764813 (+) True AMCG00016696
TU18379 other upstream 888569 26605526 ~ 26657425 (+) False AMCG00016635
TU18348 other upstream 1113638 26427339 ~ 26432356 (+) True AMCG00016633
TU18353 other upstream 1116667 26428723 ~ 26429327 (+) False AMCG00016633
TU18257 other upstream 1256772 26285863 ~ 26289222 (+) False AMCG00016625
TU18062 other upstream 1595818 25940528 ~ 25950176 (+) True AMCG00016607
TU18716 other downstream 40870 27588479 ~ 27599592 (+) False AMCG00016691
TU18717 other downstream 40870 27588479 ~ 27598648 (+) False AMCG00016691
TU18724 other downstream 65496 27613105 ~ 27619919 (+) False AMCG00016690
TU18835 other downstream 281659 27829268 ~ 27831694 (+) True AMCG00016705
TU18876 other downstream 325054 27872663 ~ 27878697 (+) True AMCG00016702

Expression Profile