RNA id: TU18707


Basic Information

Item Value
RNA id TU18707
length 351
lncRNA type sense_over
GC content 0.36
exon number 4
gene id AMCG00016683
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27542486 ~ 27553120 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGGACAGGCGGCGGCGACGGAAGCGCGCGTCTCAAGACAGCGAGGAAGAGGACGAGTCCGGCTCCGGCACCGAGAGCGCAGCGTCCGGCCCGGCGGTGGTGAAACCCCGGGCTCGGGAACCCGAACCGCCGGTGGTGCCCTGCGTCCGTGTGCGAGCGAAGAGCGACGAGGAGTcggagtgtGAGAGTGAAGATGGCATAGGAGATgCAATCCTGTCCGATTACGAGAGCGCCGACCCTGAGGAGAACGGCTCTCACTCAGAGGGCGAGGAGGAGGTGGCCTTCACTGATGAGGAGGCATCCAAGCCCCCAGCCGAGCCCAAGCCCTCCGAACCCGAGCCTGCCGTNNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18672 lncRNA upstream 172350 27369589 ~ 27370138 (+) True G15025
TU18644 lncRNA upstream 259919 27281424 ~ 27282569 (+) True G15005
TU18626 lncRNA upstream 268191 27262890 ~ 27274297 (+) True G14992
TU18559 lncRNA upstream 548540 26966297 ~ 26993948 (+) True AMCG00016663
TU18391 lncRNA upstream 826687 26715569 ~ 26715801 (+) True G14803
TU18718 lncRNA downstream 54814 27599810 ~ 27604875 (+) False AMCG00016691
TU18827 lncRNA downstream 252553 27797549 ~ 27799115 (+) False AMCG00016699
TU18859 lncRNA downstream 291517 27836513 ~ 27839103 (+) True AMCG00016706
TU18885 lncRNA downstream 447066 27992062 ~ 27992282 (+) False AMCG00016707
TU18886 lncRNA downstream 447592 27992588 ~ 27992792 (+) False AMCG00016707
AMCG00016685 mRNA upstream 3765 27528826 ~ 27538723 (+) True AMCG00016685
AMCG00016684 mRNA upstream 34252 27505189 ~ 27508236 (+) True AMCG00016684
AMCG00016686 mRNA upstream 46143 27484633 ~ 27496345 (+) True AMCG00016686
AMCG00016682 mRNA upstream 90489 27450004 ~ 27451999 (+) True AMCG00016682
AMCG00016679 mRNA upstream 115454 27425680 ~ 27427034 (+) True AMCG00016679
AMCG00016687 mRNA downstream 31537 27576533 ~ 27584981 (+) True AMCG00016687
AMCG00016691 mRNA downstream 45647 27590643 ~ 27604879 (+) True AMCG00016691
AMCG00016689 mRNA downstream 62220 27607216 ~ 27610772 (+) True AMCG00016689
AMCG00016690 mRNA downstream 68305 27613301 ~ 27626090 (+) True AMCG00016690
AMCG00016696 mRNA downstream 219578 27764574 ~ 27764813 (+) True AMCG00016696
TU18379 other upstream 885063 26605526 ~ 26657425 (+) False AMCG00016635
TU18348 other upstream 1110132 26427339 ~ 26432356 (+) True AMCG00016633
TU18353 other upstream 1113161 26428723 ~ 26429327 (+) False AMCG00016633
TU18257 other upstream 1253266 26285863 ~ 26289222 (+) False AMCG00016625
TU18064 other upstream 1592312 25940528 ~ 25950176 (+) False AMCG00016607
TU18699 other downstream 998 27545994 ~ 27547609 (+) False AMCG00016683
TU18716 other downstream 43483 27588479 ~ 27599592 (+) False AMCG00016691
TU18717 other downstream 43483 27588479 ~ 27598648 (+) False AMCG00016691
TU18724 other downstream 68109 27613105 ~ 27619919 (+) False AMCG00016690
TU18835 other downstream 284272 27829268 ~ 27831694 (+) True AMCG00016705

Expression Profile