RNA id: AMCG00016685


Basic Information

Item Value
RNA id AMCG00016685
length 3290
RNA type mRNA
GC content 0.58
exon number 10
gene id AMCG00016685
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27528826 ~ 27538723 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGAAATGAAGGCGAGAGGTGAGCTGGAGAGCGGACGGGGTAATGGGGACGGGGACAAAACATCGAGTAAAAGCCGTAGTCTTCACCCGGGACACCCGCGTCCAATGAAAAACACGACAGGCGCCTTCCAGACCTCGAAATGGCGCACTTCTGTCCCCGCTAGCTGGTTTCGTGTAGGAATGGCGAGCCAATAGAAATgcgtgttattgtttttgtcctctctctccactgcaGATCTAAAATGGAGGAGCAGTGACGGGACTCGGCTGTCCTTACgcacagtgatttaaaaaaaagagagaaagaaagaaagaaagaaaggcacTTCACACCGGAGAAGAACAAGCTAGCTCCCAGGACGAGCAGCGGCGAGGCGATCCGGGCGAGAGGAGGCGAAATGGAGGGCTCGACCCGCAGAGCCCAGGCCGTGTAGACGGAATTTAAAACCGTGCGACAAGATACCAAATACAGCGTCATTCACTAACAGACGAGCTCGTATGGGGAGGGCGAGAGCTGGTTGACGTTACTGCCCCCTCCATCTTCAAAATTAGACGCGTGTTCCTGGGAGGAGTGGGGCGCTGTGTGACGGGCAAGACCGGGCTGTGGGGGCGCTGGCTGGCTGGCCGGCTGGCTGGCGGGGGGCGCTGGGATGGTGTAGGGGTGGTTAATGTAGTAAGCCATGAATATGAGATCCACTGTGTTCGCCAGTGGTGGGTACAAGCTCGACACGGAGAAAAGCGAGTTGGAGAGAGCGCAGGCGTGCGGTGGGACCCCCAGCATCGGCGTTAAGAGGGAGCCCTGTGATTACGTCATCGACGTGCACGACGTGCTGAGCGACGTGCACGACGTCCTAGGCGACATCCACAACAGCGGCGTCCAGCAGCAGCACGCCAGCAAAACCAAGAAACTGAAGGAGAACCACGGCGGTAAAGCAGCCCGGATCCCCGTCGCGGTTGGGCTGAGCAAGTCGCAGGAGGAGAACCGGATGAGCCTGGGGACCTTGCCCGCCCCGGGGAGACAGATGGGGGGCGAGGGCACCCCTGTAAAGAGCAAGACCCTTTTCGGACAGAGCAACAGCATGGGCAAGAGCGACCCGGCGGCGGTGAACGCCAACAATAATTCGCGGGACGCCGTCGCCGAGGGGGCCGACAGAGGGGCCCCGGCGGCCGGGGCGCTCAACACGGCCACGCTGGAGCTGAGCTCGGAGGGCAAATGGAAGAACGTGAAGAAAGTGCCCAGCCACAGCCCCACGCAGGCCACCTGCCTCCGACAGATCCTGCTGCTGCAACTGGACCTGAtcgagcagcagcagcagcagctacagtCCAAGGACAAGGAAATAGACGAGCTCAAGGCCGACAAGGAGACGTTGTTGGCACGCATCGAGCGCATGGAGAGGCGGATGCAGCTGGTGAAGAAGGATTCCCGGGACAAGCAGAGGCTCTTCCAGCCACTGGACTGCGAGGACCGGGGGGCGGAGCAAGATACACTCGAGCGGGAGGAGTTTCCTGAGGGTGGAGGGTCCGAGAGCCCCCAGATCCACAGCGCCAAGCCCCTCCCCTTTGGCCGAGGTGGCAAGGGCCATAAACGAAAGTTCTGTTTTCTGGACTCCAAGACGCCCAAATCACGGGGCAAGTCGTCAAAGTTCTCCCCGCAGAAGGAGTCCGAGTTGGAGGCGGGCTCTCCGTTCCAGCGGGAGCTGCGCAGCAAGGAGACGCCTGAGAAGGCAGGGGGTGGCCGGCTGCAGGGTGATGCATCTACACTCTCTCGGGGGGGCTCCCAGGGCCTGCACATCAAAGAGGAGTCCCAGCCGGCCACTGCGGAGATGGAGGAGCTGCCATACATGGCCACCACGGAGATGTACCTCTGCCGCTGGCACCAGCCGCCCCCCTCGCCCCTCCGAGAGACATCGCCCAAGAAGGAGGAGATTGTGGCCATCCCTTCCTGGAGGGAGAACACCATGGAGCCCCTGAAAGATGCGATGGCGTCGGACATCCCCGAGAATTTGGACGACGGCGTGTTTCTGAAGCGGCACGCAAAACTGGAGTTGGACGAGAAGAGGAGGAAAAGGTGGGACATCCAGCGGATCAGGGAGCAGCGCATGTTCCAGCGGCTGCAGCAGCGTATGTACAAGAAGAAGGGCATCCAGGAGAGCGAGCCCGAGGTCTCGTCCTTCTACCCTGACGCCGATGACGTGGAATCCCTGATGATCACTCCCTTCCTGCCAGTAGTTGCTTTTGGACGGCCGCTGCCCAAACTGACCCAACAGAACTTCGAGCTGCCCTGGCTGGACGAGCGCAGCCGCTGTCGTATCGAGATGCAGAAGAAGCAGACGCCTCACCGGACCTGCAGGAAGTGATGTCCCGCTCGCTGACGTCTGGGttccttttttttgtgggggggggggttagttttattggatgtttttttgtttttgtttttttgtagagAACTAAAACCTATCCTTATCAATGGACAAAAGGATCTGGGAGACgaaaagcaagcaagcaaacaaacaacaaaagacaTTTTGATTTCGAGGATGGAGGGGTTGGGGGAGGCGGACGTACGCAGACCACCTTGCCCCCGCTCTGCTGATGTAGCACGGTACTGGTAGCGTTCCTGTGAGATCCCACTGCATTGGCAGTGGGCAGGCCTGCTCTGTGGGGTGACTGGGGGGGCACAGGGGCAAATCCAGAGCAAGGAGCCTGCAGGCTGCTCTGTGGACCTGGGGGGCAAGGGCAAGAAAAGATCTaaacaagaaagcaaacaagatagaactgtctgtttttaaaatctccTTTAAGTAGGAAGACCTGAGAAGGAAAACCATACTGGTGGTTCACTCCTAAAGACTGGTGGTGCTGCGGCAGCTGGAAGCCTTGGTCTCCACTGGGGGGTCCGGCTCTGGAGTGGTGCTGCAGCGCTGTTGTATGAagaaggttgttgttttttatgggGGGGGACTGATTTTGTTCCTTCCGGACTCTTCCTTGTTCCTGCGGTGCTGTTGCACGTGTTGCAGCCTGAGAACGAGAGCCCCACACCCCACCACCACGGCCCTCCACGATCGCAGTGCTGCCGAGGCGTGCCGTCACAGTGCCCAGTGTGCCGCAGGGGTCCGGTCTGAGGATGAGCGGATCGCTTAGTGTGCGAATGTGGGGTCTGACCTCTGCCCCCGGAAGCTTCTATTTCTGCTTGTTTCTTGTGCATGTTAAAATACAGGGTGCACCcgtgtaagtgtgtgtatagAATGTAAAGGGGGATTATAATTTCTGTACTCTGCACC

Function

GO: NA

KEGG:

id description
K13163 MSL1; male-specific lethal 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18672 lncRNA upstream 158688 27369589 ~ 27370138 (+) True G15025
TU18644 lncRNA upstream 246257 27281424 ~ 27282569 (+) True G15005
TU18626 lncRNA upstream 254529 27262890 ~ 27274297 (+) True G14992
TU18559 lncRNA upstream 534878 26966297 ~ 26993948 (+) True AMCG00016663
TU18391 lncRNA upstream 813025 26715569 ~ 26715801 (+) True G14803
TU18707 lncRNA downstream 3765 27542488 ~ 27544996 (+) False AMCG00016683
TU18718 lncRNA downstream 61087 27599810 ~ 27604875 (+) False AMCG00016691
TU18827 lncRNA downstream 258826 27797549 ~ 27799115 (+) False AMCG00016699
TU18859 lncRNA downstream 297790 27836513 ~ 27839103 (+) True AMCG00016706
TU18885 lncRNA downstream 453339 27992062 ~ 27992282 (+) False AMCG00016707
AMCG00016684 mRNA upstream 20590 27505189 ~ 27508236 (+) True AMCG00016684
AMCG00016686 mRNA upstream 32481 27484633 ~ 27496345 (+) True AMCG00016686
AMCG00016682 mRNA upstream 76827 27450004 ~ 27451999 (+) True AMCG00016682
AMCG00016679 mRNA upstream 101792 27425680 ~ 27427034 (+) True AMCG00016679
AMCG00016678 mRNA upstream 112816 27414210 ~ 27416010 (+) True AMCG00016678
AMCG00016683 mRNA downstream 3763 27542486 ~ 27553120 (+) True AMCG00016683
AMCG00016687 mRNA downstream 37810 27576533 ~ 27584981 (+) True AMCG00016687
AMCG00016691 mRNA downstream 51920 27590643 ~ 27604879 (+) True AMCG00016691
AMCG00016689 mRNA downstream 68493 27607216 ~ 27610772 (+) True AMCG00016689
AMCG00016690 mRNA downstream 74578 27613301 ~ 27626090 (+) True AMCG00016690
TU18379 other upstream 871401 26605526 ~ 26657425 (+) False AMCG00016635
TU18348 other upstream 1096470 26427339 ~ 26432356 (+) True AMCG00016633
TU18353 other upstream 1099499 26428723 ~ 26429327 (+) False AMCG00016633
TU18257 other upstream 1239604 26285863 ~ 26289222 (+) False AMCG00016625
TU18064 other upstream 1578650 25940528 ~ 25950176 (+) False AMCG00016607
TU18699 other downstream 7271 27545994 ~ 27547609 (+) False AMCG00016683
TU18716 other downstream 49756 27588479 ~ 27599592 (+) False AMCG00016691
TU18717 other downstream 49756 27588479 ~ 27598648 (+) False AMCG00016691
TU18724 other downstream 74382 27613105 ~ 27619919 (+) False AMCG00016690
TU18835 other downstream 290545 27829268 ~ 27831694 (+) True AMCG00016705

Expression Profile