RNA id: AMCG00016687


Basic Information

Item Value
RNA id AMCG00016687
length 1605
RNA type mRNA
GC content 0.60
exon number 15
gene id AMCG00016687
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27576533 ~ 27584981 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAAAGTACCAGCGACACTGTCAACCCCACAGTGCCAGTGAAAATGGGCGGAGTCAGAGGACGTGTCTGagctgccccctccccctcccgcCTCTATCCTGCCAGCAGGGCTTGATGCCAGCATCCAGTTCCAGTAGCCCCACTCTGTTCCTGTCTCTTATGAAAAGTTCTCACCTGTCCTCGGAGGACTCCAGGTTTCCTTTGCATGCGGAGGGGCAGTCGGGGTGGTTTTGCTGTCTGCGgtctgggctgggctgggccgGGCGCAGTCTCGTGGTGTCTCTGCAGACCCTGCTGGATGACTTCATGCTCACACATCCCATCTTCCTGCCGCCCGACAAGTTCCAGCAGGTCCTACTACAACAGTTCCGCGCCGACGGGAAGCAGAGCGAAGGCTGGCAGGGCTGGGACGGCGCGGACAGGAAACAGACGGTGCTGAGCGTGGCGTTCCGCTACCTGGAGACGTACCgagagctgctgcaggaggaggGAGAGCGATCGCACCAGTTCCCCAAGGAGCTGTACCTGTGTGCTGCACAGGAGCTGAGCCGCTACCCCGAGCTGGTAGAGGATGTTCTCAAACTACAGCGTTGGACTGAGATCCTGCAGAGCCAGGTGGAGGAGGACAGAGACAGCAAGAAGAAGCAGGTGCGACCGCTTTTCAGACACTTCCGCCGCATCGACGCCTGTCTGCAGCCGAGAGAGGCCTTCCGAGGGTCTGACGAGATCTTCTGCCGGGTTTACACACCGGACCACTCGTATGTGACGATCCGCAGCCGGCTGTCCTGCAGCGTGGGCGAGATCCTGGCGCTGGTGCGGGAGAAGCTGCAGTACAGCGAAGAGCAGCCCGCCAGGCAGGGGGCGCTGGTGTTGGTCGCGGTCACCTCCGCTGGGGAGAAGGCCCTGTTCCGGCCCAGCGATGAGGCGGTCTTCACCACGCTGGGTGTCAACACGCATCTCTTCGCCTGTGAGCCGCAGGAACTGGAAACACTGCTGCCCCTGCCTGAGGAGATCCACTGGTCACCTGGTGACAGCAAACTGCATGACATGAGTGCTGAGGAGGTGTCCAATCAGCTGGTGGCATTCGACTGGGAGCTGTTCAGCTGTGTGCATGAGGTGGAGTTCGTGTGCTACGTCTTCCACGGGGAACAGGCTCGCTGGCGCCCCCTGAACCTGGAGCTGGTACTGCAGCGCTGCAGCGAGGTGCAGCACTGGGTAGCCACAGAGATCCTGCAGTGCCAGTCCCTGCCCAAGAGGGTGCAGCTGCTGCGCAAGTTCATCAAGATCGCAGCACTGTGTAAGCAACAGCAGGACCTGTTGTCATTCCTGGCCGTGGGGCTGCCGGGGAAGTTTAAGAAGCAGTTCCAGCAGTTTGAGAGCACTGTGGACCCGTCCAGGAACCACAAGTCCTACCGTGACCTCATCTCCAGTCTGCGCCCGCCCGTCATCCCCTTCACCCCgctcctgctgaaagactTGACATTCCTGCATGAGAGCTGCAAGACCTTCCACGGAGACCTGGTCAATTTTGAGAAAATGGTGATCGACAATCAGAACCTCCTGTTCAACATGTCCTGCAAGCTGGAGCCCAAAGATGTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18707 lncRNA upstream 31537 27542488 ~ 27544996 (+) False AMCG00016683
TU18672 lncRNA upstream 206395 27369589 ~ 27370138 (+) True G15025
TU18644 lncRNA upstream 293964 27281424 ~ 27282569 (+) True G15005
TU18626 lncRNA upstream 302236 27262890 ~ 27274297 (+) True G14992
TU18559 lncRNA upstream 582585 26966297 ~ 26993948 (+) True AMCG00016663
TU18718 lncRNA downstream 14829 27599810 ~ 27604875 (+) False AMCG00016691
TU18827 lncRNA downstream 212568 27797549 ~ 27799115 (+) False AMCG00016699
TU18859 lncRNA downstream 251532 27836513 ~ 27839103 (+) True AMCG00016706
TU18885 lncRNA downstream 407081 27992062 ~ 27992282 (+) False AMCG00016707
TU18886 lncRNA downstream 407607 27992588 ~ 27992792 (+) False AMCG00016707
AMCG00016683 mRNA upstream 23413 27542486 ~ 27553120 (+) True AMCG00016683
AMCG00016685 mRNA upstream 37810 27528826 ~ 27538723 (+) True AMCG00016685
AMCG00016684 mRNA upstream 68297 27505189 ~ 27508236 (+) True AMCG00016684
AMCG00016686 mRNA upstream 80188 27484633 ~ 27496345 (+) True AMCG00016686
AMCG00016682 mRNA upstream 124534 27450004 ~ 27451999 (+) True AMCG00016682
AMCG00016691 mRNA downstream 5662 27590643 ~ 27604879 (+) True AMCG00016691
AMCG00016689 mRNA downstream 22235 27607216 ~ 27610772 (+) True AMCG00016689
AMCG00016690 mRNA downstream 28320 27613301 ~ 27626090 (+) True AMCG00016690
AMCG00016696 mRNA downstream 179593 27764574 ~ 27764813 (+) True AMCG00016696
AMCG00016699 mRNA downstream 192446 27777427 ~ 27799126 (+) True AMCG00016699
TU18699 other upstream 28924 27545994 ~ 27547609 (+) False AMCG00016683
TU18379 other upstream 919108 26605526 ~ 26657425 (+) False AMCG00016635
TU18348 other upstream 1144177 26427339 ~ 26432356 (+) True AMCG00016633
TU18353 other upstream 1147206 26428723 ~ 26429327 (+) False AMCG00016633
TU18257 other upstream 1287311 26285863 ~ 26289222 (+) False AMCG00016625
TU18716 other downstream 3498 27588479 ~ 27599592 (+) False AMCG00016691
TU18717 other downstream 3498 27588479 ~ 27598648 (+) False AMCG00016691
TU18724 other downstream 28124 27613105 ~ 27619919 (+) False AMCG00016690
TU18835 other downstream 244287 27829268 ~ 27831694 (+) True AMCG00016705
TU18876 other downstream 287682 27872663 ~ 27878697 (+) True AMCG00016702

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051312 True 2497 mRNA 0.54 14 NC_007114.7 23340864 ~ 23407720 (-)