RNA id: AMCG00016690


Basic Information

Item Value
RNA id AMCG00016690
length 1932
RNA type mRNA
GC content 0.52
exon number 9
gene id AMCG00016690
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27613105 ~ 27626090 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGATCAGAACACAGAGCAGATAGAGAAGATCCTACAGGAGGCCCCGGTAGCCCGGCAGGCCCTCCTGGACAACTACAGCAACCTGCACAAGGTGGCCGACTACTGCGAGACCAACTACTTGCAGGTGGATGACCAGAAGCAGGCCCTGGAAGAGACCAAGAAGTTTGCCACGCAGTCCCTGGCCAGTGTGGCGTACCAGATCAGCACCTTGGCGTCCAACGTTCTGAAGCTGCTGGACGCCCAGACTGATGGTCTGCGCCAGATAGAGTCCTCTGTCCACCTCCTCTCCCAGACGGTGGACATGCACCGCGAGAAGGTGTCCCGGCGTGAGATCGGCGCGTTCACCATGCCCAAGAGGCTCCCGCGCCACCAGAAGGTCATCCCCCCTGCCGCCAGCCCCGAGCAGAAGCCCCGTTACTCCCGAACACCAATCAACTTTGCAGGGCTGGACACCTTGGGCCACGGCATGAAGGACTCAAGCAAGCAGCTCGGTCGGACAGGAACCATGACACGCAAGCAGTCGAACCGGGAGGCGGGAGGAACTCTGGGGAGGAGTGCCCGAGTGCCCGAGCCAGTGCAGTGCCCCGTGGCCCCCTCTTTGTCTCTGGCGGAAGAAAGTGGCTTCCATCTCCCCATGGTATCAGACGTGCTCCCCCCCCCGCCGCTGACAGACGGCTTCGAGCTCCCGGTACCCCCCCCTCCGCCAGGCAGCGAGTTCAGCTCAGTCAtcatcccccctcccccgccaTACCCCCCCCCTCTAGCCCCCCTGGCCCTGCTGACCCCCACATTGGGCTCTGCCTCGCGGCTCCGGCGCTTCGACATGGATTTCCaggcccctcctcctcccccagaCCTGACGGGACACTTTGTGGATGACAGTgggccccccccacccccgcctaTAGACTATGACCCTGCACTACCCGTCAACTATGAGGAGAAAGTCCTGGCCCTGTACACCTACAGCCCCAGCAAGCCGGACGAGCTGGCCTTCCAGGAGGGAGACGTGATCTACGTCACCAAGAAGAACGAGGATGGCTGGTACCAGGGCGTCTTCAACGGGAGGGAAGGCTACTTTCCGGCGACCTACGTGACCTCGGCCAGCTAACCGCCCCGGCGAATGGAGATGGAGCCAAAAAAACAGCCCAGGGGACACACCAGCATGGGGGCTCATCAGTGAAGCCCCAGCTAGACTAAGTGAATGTGGGTTGATTTTAAACATGGGGATGGGGGAGGGATACAGGTAGCGGAGGGCGGCCAGGATTGTATTCTTACCCAcagaatttgttaaaaaaaaaaattatatatatattttaaactaactGAAGGCAGCTATCTTTTTACGTTCTCCAGCCTTAATTGTCTACCATGTTTAACGCAGTAACCTCGGCTACTTTATGATTattggtaattaaaaaataactaataaataaatacaaataaataaaatacaaaacaaaacagaaagggTGGCCTTATTGTGATTGGACTGTTTCAGTGCAATTGTGCTCAACTATTCACAGTGCTAATATATAATCAGATTTCACAGAGAGATGTAATATATAACTCAAGGTTTTCAAGCGAGGATGATTGTTCTGCAGTGAATTTTTTAAGTTAAGTTTTAATGAAGCCCTTGGTTATGGAGGATATAACTTGTTTCTCctctcacttttttttgttattatttttaatttatttgtgcagCTGTCTTTAATGTTGTATgtcttgattttaatttattgtgctTACAGTTGTGTCTGTACCCCCCCACCGTGTAACCTGACCTCTTGTTTTTGCCATGTCATCTTCACAGTCATGTAACAGCTCCGACACTCGCAGTCCCTGATCACCTCCAATACGAGAATTAAAAGCCATTAACACCCAGTGAAATGTTGCggttttattgatgttttgctCTGGTTTG

Function

GO: NA

KEGG:

id description
K23710 ABI3; abi gene family member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18718 lncRNA upstream 8426 27599810 ~ 27604875 (+) False AMCG00016691
TU18707 lncRNA upstream 68305 27542488 ~ 27544996 (+) False AMCG00016683
TU18672 lncRNA upstream 243163 27369589 ~ 27370138 (+) True G15025
TU18644 lncRNA upstream 330732 27281424 ~ 27282569 (+) True G15005
TU18626 lncRNA upstream 339004 27262890 ~ 27274297 (+) True G14992
TU18827 lncRNA downstream 171459 27797549 ~ 27799115 (+) False AMCG00016699
TU18859 lncRNA downstream 210423 27836513 ~ 27839103 (+) True AMCG00016706
TU18885 lncRNA downstream 365972 27992062 ~ 27992282 (+) False AMCG00016707
TU18886 lncRNA downstream 366498 27992588 ~ 27992792 (+) False AMCG00016707
TU18926 lncRNA downstream 490828 28116918 ~ 28117190 (+) True G15224
AMCG00016689 mRNA upstream 2529 27607216 ~ 27610772 (+) True AMCG00016689
AMCG00016691 mRNA upstream 8422 27590643 ~ 27604879 (+) True AMCG00016691
AMCG00016687 mRNA upstream 28320 27576533 ~ 27584981 (+) True AMCG00016687
AMCG00016683 mRNA upstream 60181 27542486 ~ 27553120 (+) True AMCG00016683
AMCG00016685 mRNA upstream 74578 27528826 ~ 27538723 (+) True AMCG00016685
AMCG00016696 mRNA downstream 138484 27764574 ~ 27764813 (+) True AMCG00016696
AMCG00016699 mRNA downstream 151337 27777427 ~ 27799126 (+) True AMCG00016699
AMCG00016698 mRNA downstream 184558 27810648 ~ 27817193 (+) True AMCG00016698
AMCG00016697 mRNA downstream 196583 27822673 ~ 27823994 (+) True AMCG00016697
AMCG00016705 mRNA downstream 203275 27829365 ~ 27833537 (+) False AMCG00016705
TU18716 other upstream 13709 27588479 ~ 27599592 (+) False AMCG00016691
TU18717 other upstream 14653 27588479 ~ 27598648 (+) False AMCG00016691
TU18699 other upstream 65692 27545994 ~ 27547609 (+) False AMCG00016683
TU18379 other upstream 955876 26605526 ~ 26657425 (+) False AMCG00016635
TU18348 other upstream 1180945 26427339 ~ 26432356 (+) True AMCG00016633
TU18835 other downstream 203178 27829268 ~ 27831694 (+) True AMCG00016705
TU18876 other downstream 246573 27872663 ~ 27878697 (+) True AMCG00016702
TU18924 other downstream 478647 28104737 ~ 28105711 (+) True G15223
TU19419 other downstream 2446848 30072938 ~ 30074896 (+) False AMCG00016772
TU19422 other downstream 2455164 30081254 ~ 30083528 (+) False AMCG00016772

Expression Profile