RNA id: TU18716



Basic Information


Item Value
RNA id TU18716
length 1199
RNA type TUCP
GC content 0.64
exon number 5
gene id AMCG00016691
representative False

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27588479 ~ 27604879 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tgaaggagagaaagagagagagagagcaaaaaagacagagaaggtgggaagagagagagagagagagagagagagaaaataagtgtTACGTCCACTAATGTACAACTAATAGCGATGTAAACAGCCGAAGCGCAGGTCGCAGACTTGAGATTGAATACTCGGGCGAACTCGGAGAGGCCGAGTGGCAGTCGGATgagggaaacacacacagccagagagagaAGCAAGGAAGAAGTCGACCTAGAGCAGCCTTTCTGAGTCCCATTTCTCGTTTCATTTCGCTGTATTTCCTTCACGTGTAAgatcctgctctctcctcccctTATTATCGATGTTGTTTTCGAGAGAGTCTCCGGATCTACGCAGAAGACGAGGTGTCTGAGGGCGCAGGTGCCGAGACGCTGAGCGGGACCGCGCTCACCCAGCGACAGGATGCCGATTCCCCCGCCTCCACCCCCGCCGCCTGGGGGCCCCCCGCCACCCCCTGCCTTCAGCCAGAGCCCTCCCAAGCTGAAACGGGATGACCAGAAGGGCCGGGGGGCACTGTTGTCGGATATCTGCAAGGGCGCCAAACTGAAGAAAGTCACAGCGGTGAATGACAGGAGCGCCCCAGTCATAGAGAAACCTAAAGGGGGAGGTGGCGgcggtggaggaggaggaggaggaggaggaggcgggtTCGGAGGCGGTTCTGCGGCACTCCAGCCAATGGGAGGCCTGTTCCAGGGGGGTATGCCCAAACTCAGGGCAGTCGGAGATGGCTCTGTTGGGAGGTCAGCACTGCACCCCCCCGGCTCCCGTCCAGCTGCCCCGCGCCCGCCCTCCACCTCGTCCAGCCGGCAGAGTGACGGAGACTCGGGCGGCCTGCGCGCCTCCCCCCCCGAGCTGCCCCGCTCGCACAGGCCCTCTCTCCCGGACCTGTCCCGGCCGGCCGGGGGCAGCAGCGGCTCCGCGGGGGGCATGAAGCACAGCTCGTCTGCCCCACCGCCCCCCCCGCCTCTCTCCCGCCGTGGCattgcaccccccaccccaaaaggGGGCGTGCCCTCCTATAACCGTGAGAAGCCCCTGCCGCCCACTCCTGGACAGAGAGGACCACCCAGCTCCACCCGGGATGCCGCTCCCCCTCCTCCTGTCAAGCCGCCCCCCTCCCCGCTCAACACGCCCCGACCAAGCACCACTGGGGGGGGCCACAGCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU18707 lncRNA upstream 43483 27542488 ~ 27544996 (+) False AMCG00016683
TU18672 lncRNA upstream 218341 27369589 ~ 27370138 (+) True G15025
TU18644 lncRNA upstream 305910 27281424 ~ 27282569 (+) True G15005
TU18626 lncRNA upstream 314182 27262890 ~ 27274297 (+) True G14992
TU18559 lncRNA upstream 594531 26966297 ~ 26993948 (+) True AMCG00016663
TU18718 lncRNA downstream 218 27599810 ~ 27604875 (+) False AMCG00016691
TU18827 lncRNA downstream 197957 27797549 ~ 27799115 (+) False AMCG00016699
TU18859 lncRNA downstream 236921 27836513 ~ 27839103 (+) True AMCG00016706
TU18885 lncRNA downstream 392470 27992062 ~ 27992282 (+) False AMCG00016707
TU18886 lncRNA downstream 392996 27992588 ~ 27992792 (+) False AMCG00016707
AMCG00016687 mRNA upstream 3498 27576533 ~ 27584981 (+) True AMCG00016687
AMCG00016683 mRNA upstream 35359 27542486 ~ 27553120 (+) True AMCG00016683
AMCG00016685 mRNA upstream 49756 27528826 ~ 27538723 (+) True AMCG00016685
AMCG00016684 mRNA upstream 80243 27505189 ~ 27508236 (+) True AMCG00016684
AMCG00016686 mRNA upstream 92134 27484633 ~ 27496345 (+) True AMCG00016686
AMCG00016689 mRNA downstream 7624 27607216 ~ 27610772 (+) True AMCG00016689
AMCG00016690 mRNA downstream 13709 27613301 ~ 27626090 (+) True AMCG00016690
AMCG00016696 mRNA downstream 164982 27764574 ~ 27764813 (+) True AMCG00016696
AMCG00016699 mRNA downstream 177835 27777427 ~ 27799126 (+) True AMCG00016699
AMCG00016698 mRNA downstream 211056 27810648 ~ 27817193 (+) True AMCG00016698
TU18699 other upstream 40870 27545994 ~ 27547609 (+) False AMCG00016683
TU18379 other upstream 931054 26605526 ~ 26657425 (+) False AMCG00016635
TU18348 other upstream 1156123 26427339 ~ 26432356 (+) True AMCG00016633
TU18353 other upstream 1159152 26428723 ~ 26429327 (+) False AMCG00016633
TU18257 other upstream 1299257 26285863 ~ 26289222 (+) False AMCG00016625
TU18724 other downstream 13513 27613105 ~ 27619919 (+) False AMCG00016690
TU18835 other downstream 229676 27829268 ~ 27831694 (+) True AMCG00016705
TU18876 other downstream 273071 27872663 ~ 27878697 (+) True AMCG00016702
TU18924 other downstream 505145 28104737 ~ 28105711 (+) True G15223
TU19419 other downstream 2473346 30072938 ~ 30074896 (+) False AMCG00016772

Expression Profile