RNA id: AMCG00016692


Basic Information

Item Value
RNA id AMCG00016692
length 2710
RNA type mRNA
GC content 0.53
exon number 11
gene id AMCG00016692
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27643639 ~ 27650849 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccctccctccctccctcgtgTGTATCTGTGCATCTGCTGTTACAGAGCCTTGCTGGAAGATGTGGCTCCTGCTGCTCCTGGGGGCTGTAGGCCTGGTCCTGGTCCTAGGCTTCACTGCTTATTACCGCATGTTCGGCAGCAAAGTCAGCCCGTTCTCCCTGGACTCGGTGCGCCCGCCCGGGCCGCTGGTGACGGaccagaggcagagagacagagtgctTAAGCAAGGGTTCCGTGCCAACCGGGTGCCGAAGGACCTGGATGCTGTGGTGATTGGCAGTGGCATTGGCGGGCTCACAGTGGCAGCTGTGCTGGCAAAGGCCGGCAAGCGGGTGCTGGTCCTGGAGCAACACGACCAGGCAGGGGGCTGCTGCCACTCCTTTGTGGATAAAGGCTTCGAGTTTGATGTCGGTATCCACTACCTGGGCCAGCTCCACGAGAACAGCCTGCTGCGCATCGTGATGGACCAGATCACCGAGGGGCAGTTGCAGTTCGCACCGCTGGAGCAGCACTACGACACAGTCATCCTTGGGGACAAGCAGAACAGCCGCCGCTACCACATCCACAGCGGCAAGACCGAGATGGCGGAGAGCCTCAAGCGACAGTTCCCTGAGGACACTGAGGCCATCGATGAGTTAATGAGGCTCATGAAGCTCTCCGCCCGCCGCACTCCTCTGGTGGCATCTTTGAAGTTCATGCCACTCTGGTTGGTCAGATTCCTCATCCGTACCGGCATCCTGCACCGCATCTCCCCCATCTACGGCCTGGCCACCACCAGTCACTCCGAGCTGCTGGGGAAGCTCACCCAAAACAAGGACCTGCAGGCCCTGTCCGCATACTTCTTTTACGGTGTGCCTCCTAAAGACTCCAGCTTCCTGATTAATGCCCTGCTGCTGCACCACTACAAACGAGGGGCGTACTACCCCAGAGGGGGGGCCAGCGAGATCGCCTTCAACATCATCCCAGTCATCCAGAAGGCAGGGGGCACTGTGCTGGTCAGAGCTCCCGTTCAGCGAGTCCTAGTGAACCAGAAGGGCACAGCATACGGTGTGACCGTGAAGAAGGGTCAGGAGGAGGTCAGCATCCTGGCCCCAGTGGTCATCTCCAATGCCGGGATGTTCAATACCTTTGAGAAGTTCCTGCCCCCTGAGGTCCAGGCCAAGCCAGAAATTCAGTCCCACCTCGGCATGGTCCAGCATGGCATGGGCTCCTTCCTGGTGTTTGTGGGTCTGGATGGGACCAAGGAGGATCTGGGCATCGTCTCCACCAACTTCTGGATGTATAAACACAACGACCTGGACAAATTGATGGATCACTATGCCTCTCTGGACCGGGAGGAGGTGGCAGCCAACATCCCCATGATGTTCATCACCTTCCCCTCAGCTAAAGACCCCACCTCCAGCATCAGACACCCAGGGAAGTCATGCATGACTCTGCTGACCATGGCTCGCTACGAGTGGTTCGAGGAGTGGAAGGACACCACCCTGCAGAAGAGAGGGCCCGACTACGAGAATCTCAAGATGGGCATCGCCAATGCGCTCCTGGACTGGGCCTGCGAGATCCACCCCCAGATCAGGGAGAAGGTGGTGTTCATGGAAGCGGCCACCCCTCTCTCCAACATGCACTACCTGGGCGCCCCGCGGGGAGAGATGTACGGGGCTGAACACAACCTGGCCAGGTTCACCCCTGAGGTGGTGGCCAGGACCCGTTCAGAGACGCCAGTCAAGAACCTCTACCTGACAGGCCAGGACGTGTTCTGCAATGGGCTGGCGGGGGCACTGCACGGGGGGCTGCTCTGTGCTTCGGCTGTCCTCAACCACATCCTGTACATCGACCTCCTAGCGCTGAAGAAGAGACTGAAGTGGGAGAAGGCCAGGAAACAGGCCTGAGGACCAGGACTCGGCCAGCATCCCCCACTGCACACCCCATCCTCCGGAGCCCAACAGCCCAAGCGTCCCCCGTCCTCTCTGACTGAGAGGAGAACCAACCCCACAGTGAGCCATAGGGTGACTGCAGCCACACTGAGCACTACTGagctaaaaagaaaatgaaaacctcTCGGGTGTGCATTAACCCTCccataagaaagaaagacagaataaGGAGAGCAGCtattttgatattgttttgaTGACAGACCAGCAAGTGGGCTGAAGATCATCTCCAGTCCAATATATCAATTAAAGactgttatattttaaatatattccattCCAATCCTGTATTGCCTGTCCTGGTTATATAACTGCATGCCTGAGAAGATAATAGTGATTAGGCAACCAACCTTTAACAATGCAACAAACCTTGTtactatatttataattttaatagatttttgttttgtttttggttgtaaGCATACGTTTCATTTACATTGtcgttttcttgtttgtttctataCATACTTGTTTTATAgtgcctctgtgtctgtgttttccaCAATAAAAGACCTTGAAACGCTATTAACGAGGTCTTGTGAATTTTGACGCACAAGACCGATATGTCAGTGGGGACATCACATAGAGATTGGACAACAAGGTTGTTTCAAGATGAGAGGTGAGAAGGAGAggaactacattttttttaatagttctttatatttgtgcagttttagtttatgattttcaaataaaatgttgtgtttatttttaccattatcAATGTGCACATTAAGTAGAATTGTCCTGGACTTGTATATACCTAAGTTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18775 lncRNA downstream 90477 27550312 ~ 27553162 (-) True G15095
TU18755 lncRNA downstream 101799 27535325 ~ 27541840 (-) True G15079
TU18746 lncRNA downstream 218818 27424554 ~ 27424821 (-) True G15075
TU18745 lncRNA downstream 227100 27416249 ~ 27416539 (-) True G15074
TU18744 lncRNA downstream 227747 27415653 ~ 27415892 (-) True G15073
TU18848 lncRNA upstream 143743 27794592 ~ 27794980 (-) True G15165
TU18849 lncRNA upstream 145934 27796783 ~ 27797008 (-) True G15166
TU18858 lncRNA upstream 151280 27802129 ~ 27805042 (-) True G15172
TU18854 lncRNA upstream 159789 27810638 ~ 27815464 (-) True G15169
TU18892 lncRNA upstream 232790 27883639 ~ 27884430 (-) True G15200
AMCG00016688 mRNA downstream 126666 27509645 ~ 27516973 (-) True AMCG00016688
AMCG00016681 mRNA downstream 209779 27430102 ~ 27433860 (-) True AMCG00016681
AMCG00016675 mRNA downstream 262551 27375965 ~ 27381088 (-) True AMCG00016675
AMCG00016670 mRNA downstream 267939 27370979 ~ 27375700 (-) True AMCG00016670
AMCG00016669 mRNA downstream 304046 27338007 ~ 27339593 (-) True AMCG00016669
AMCG00016693 mRNA upstream 4899 27655748 ~ 27669412 (-) True AMCG00016693
AMCG00016694 mRNA upstream 50163 27701012 ~ 27707529 (-) True AMCG00016694
AMCG00016695 mRNA upstream 81466 27732315 ~ 27738429 (-) True AMCG00016695
AMCG00016700 mRNA upstream 155500 27806349 ~ 27809112 (-) True AMCG00016700
AMCG00016701 mRNA upstream 189346 27840195 ~ 27842668 (-) True AMCG00016701
TU18749 other downstream 214988 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 239717 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 273500 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 364305 27268820 ~ 27279334 (-) True AMCG00016671
TU18448 other downstream 1071998 26568669 ~ 26571641 (-) False G14843
TU19143 other upstream 1130623 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 2550610 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 2875443 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 4772209 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 4846658 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile