RNA id: AMCG00016693


Basic Information

Item Value
RNA id AMCG00016693
length 1488
RNA type mRNA
GC content 0.59
exon number 10
gene id AMCG00016693
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27655748 ~ 27669412 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGAGAGAATTGGAATGTAAAAGTGAAGTCCTTCTATTTTTCTCTGCAGCTATGCAGCACGTCCTGGACACCCTGAGCGACTCGGCCAACTCCACTTCAGCCAATGCCCTGGACCTCATCTTCCTCAAGGGCATCATGGAGAGCCCCATAACGCACGATTCCGTGGCCTCCAAGAGCTACGAGAcacccccccccagcccctgtGCCTTTCTGGACGCGGCTCTCAACAACCAGCCAGTCCCCCCCGACGCCGTCAGGATGGTGGGCATCCGGAAAGTCTCTGGAGAGCACCTGGGCGTGACATTCCGCGTGGAGAGCGGGGAGCTGGTGATCGCACGCATCCTGCACGGGGGCATGATCGACCAGCAGGGCCTTCTGCACGTGGGTGACATCATCAAAGAGGTCAACGGCAAGGAGGTGGGCAATGACCCCAAGGTGCTGCAGGAGATGCTCAAGGAGGCCAGTGGCAGCGTGGTCCTCAAGATCCTGCCCAGCTACCAGGAGCCACACCCCCCGCGCCAGTGTCACTTCGACTATGACCCTGCCCACGACAACCTGATCCCCTGCAAGGAGGCGGGGCTGAAGTTCAGCAGCGGCGACATCCTGCAGATCGTCAACCAGGAGGACCTCAACTGGTGGCAGGCCTGTCATGTGGAAGGGGGCAGTGCCGGCCTGATCCCTAGCCAGCTGctggaggagaagaggaaggcCTTTGTCAAGAGGGACCTGGAACTGGCTGCAGTGGGTGCGCTGTGCGGGGGCATCAGcggcaagaagaagaagaagatgatgtACCTGACAACGAAGAATGCAGAGTTTGATCGCCACGAGTTGCTCATTTACGAGGAGGTGGCTAAGATGCCACCCTTCAGGAGGAAGACGCTGGTTTTGATCGGGGCGCAGGGAGTGGGCCGGCGCAGCCTGAAGAACAAACTCATGCTTTCTGACCCAACCCGATACAGTACTACCATCCCCTACACATCCCGGAAGCCCAAGGAGGATGAGAAGGACGGGCAGATGTACCTGTTCGTGTCGCGTTCTGAGATGGAGCAGGACATCAAGAACGGGCGCTACCTGGAGCACGGAGAATACGACGGCAACCTGTATGGCACCAAGATCAACTCCATCCACGAGGTGGTGGAGGCTGGCAAGATCTGCATCCTGGATGTCAACCCCCAGGCGCTGAAGGTACTGCGGACATCTGAGTTCCTGCCCTACGTGGTTTTCATCGAGGCGCCCGACTTGGAGGTTCTCCGGGCCATGAACAAGTCAGCCATCGAGGCTGGAGTGGTGACCAAGCAGCTAACGGAGGCGGAGCTGAAGAGAACCCTGGACGAGAGCGGACGGATCCAGCGCGCCTACAGCCACTACTTCGACCTCACCATTGTCAACGACAACCTGGAGGGGGCCTTCCGTGGCCTGCGGGCAGCGCTGGAGAGACTGAGCGCTGAGCCCCAGTGGGTTCCCGTCAGTTGGGTCTTCTAA

Function

GO: NA

KEGG:

id description
K24048 MPP2_6; MAGUK p55 subfamily member 2/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18775 lncRNA downstream 102586 27550312 ~ 27553162 (-) True G15095
TU18755 lncRNA downstream 113908 27535325 ~ 27541840 (-) True G15079
TU18746 lncRNA downstream 230927 27424554 ~ 27424821 (-) True G15075
TU18745 lncRNA downstream 239209 27416249 ~ 27416539 (-) True G15074
TU18744 lncRNA downstream 239856 27415653 ~ 27415892 (-) True G15073
TU18848 lncRNA upstream 125180 27794592 ~ 27794980 (-) True G15165
TU18849 lncRNA upstream 127371 27796783 ~ 27797008 (-) True G15166
TU18858 lncRNA upstream 132717 27802129 ~ 27805042 (-) True G15172
TU18854 lncRNA upstream 141226 27810638 ~ 27815464 (-) True G15169
TU18892 lncRNA upstream 214227 27883639 ~ 27884430 (-) True G15200
AMCG00016692 mRNA downstream 4899 27643639 ~ 27650849 (-) True AMCG00016692
AMCG00016688 mRNA downstream 138775 27509645 ~ 27516973 (-) True AMCG00016688
AMCG00016681 mRNA downstream 221888 27430102 ~ 27433860 (-) True AMCG00016681
AMCG00016675 mRNA downstream 274660 27375965 ~ 27381088 (-) True AMCG00016675
AMCG00016670 mRNA downstream 280048 27370979 ~ 27375700 (-) True AMCG00016670
AMCG00016694 mRNA upstream 31600 27701012 ~ 27707529 (-) True AMCG00016694
AMCG00016695 mRNA upstream 62903 27732315 ~ 27738429 (-) True AMCG00016695
AMCG00016700 mRNA upstream 136937 27806349 ~ 27809112 (-) True AMCG00016700
AMCG00016701 mRNA upstream 170783 27840195 ~ 27842668 (-) True AMCG00016701
AMCG00016709 mRNA upstream 322235 27991647 ~ 27997674 (-) True AMCG00016709
TU18749 other downstream 227097 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 251826 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 285609 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 376414 27268820 ~ 27279334 (-) True AMCG00016671
TU18448 other downstream 1084107 26568669 ~ 26571641 (-) False G14843
TU19143 other upstream 1112060 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 2532047 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 2856880 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 4753646 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 4828095 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00010028 False 1683 mRNA 0.53 12 NC_007123.7 10199926 ~ 10275320 (-)
grasscarp (Ctenopharyngodon idella) CI01000069_04562461_04568806.mRNA True 1062 mRNA 0.52 7 CI01000069 4562461 ~ 4568896 (+)