RNA id: AMCG00016695


Basic Information

Item Value
RNA id AMCG00016695
length 3008
RNA type mRNA
GC content 0.58
exon number 10
gene id AMCG00016695
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27732315 ~ 27738429 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAGAAATGAAAGACGGACCGCTGGAGGAAAAGTGCGTGGAAAGGAGGGAGATTTAATTTATCAtcgttatttttttattttaatttgagaagTACTTTGAGTGTCCGTTGTTTTACCCAACATGGAGTTAGACACCGATATCCAGACAGTGGCCAAAGGAGGCTTCCATTGTGTTCTGTGTGACGTCAGTGTGCCAAACCAGGCCAGTCTGGAGGACCACCTGAAGGGCCGCAAGCACCAGAAGCTGTGCAGCGTGCGGGAGAGCCGCCGGGCGCAGGAGGAGCACAGCGTGTTCGTCAGCGGCTTCCAGCGTGGGACGTCCCAACAGCAGCTGACGGACTACTTCCAGCGCTTCGGACCTGTGGCCGAGATCATCATGGACAAGGACCAGGGTGTTTATGCCATTGTGCAGTTTGGTGACAAGGAGAGCCTGCAGGGGGCGCTCGCCCAGCCCCAGCACAGTATGGAGGGCCAGCGTCTGCGAGTCAAGCCCCGGGAGAAGAAGGAGTTCAAGTACACCCCCAAGAAGAAGCAGGATGTGGGCAAGAACCCCCTGAACCCAGAGCTCCTCTGCCAGGTGGCCACAGTAGCGGAGCAGATGCAGCGTGTGGTGGAGGTGTCCGAGCTGCCGGAGAGTGAGCGCCGGGTCAGGGAGCTGCTGGTGGCCATGCTACAGGAAGTCTTCACAGAGTTCTTCCCAGAGTGTAAGATCCTGCCCTTCGGCTCCTCGGTGAACTCTTTTGGCATCCGCTCCTGTGACCTGGACCTCTTCCTGGACCTGGAGAACACCAAGAGCTTTCAGGCTCGGGCAAAGAGTACCGCCGAGCAGGCTGGGGAGGGACAGTCAGAGGACGCGCGCTCGGAGGACTCCATCCTGTCGGACATAGACCTGGCCACGGCGTCCCCGGCAGAGGTGCTGGAGCTGGTGGCGGCCGTGCTGCGCCGCTGCGTGCCCGGGGCGCACAAGGTCCAGGTGGTCAGCTCCGCCCGCCTCCCTGTTGTCAAGTTCAGCCACCGAGAGCTGGCGCTGCAGGGGGACATCTCCATCAACAACAGGCTGGCTGTCAGAAATACCCGTTTCCTCCAGCTGTGCTCTGCGCTGGATAACAGGCTGAGACCCCTGGTGTATACTGTCAGACACTGGGCCAAGCAGAAGCAGCTGGCGGGGAACCCCTTTGGTGGAGGGCCTCTCCTGAATAACTATGCCCTGACCCTGCTGGTGATCTTCTACCTTCAGAACCGAGACCCCCATGTTCTGCCCGCCGTGCGTCTCTTCAAACAGATGGCCAGCAAGGAAGAGGAGTGTGTGATCGAAGGATGGGACTGCTCCTTTCCCAGCAGCCCCCTGGCCGTGCCCCCAAGCCAAAACACGGAGGAACTCGgctCCTTGCTGGCTGGTTTCTTCTCTTTCTATGGCCAGTTTGATTTTGCAGGCTCGGTCATCTCCCTGCGCGAGGGCCGGGCCCTCCCAATCACTGACTTCCTGAGTGTGGAGGAGCAGCAGGAAGcgaaggagaaggaaaaaaaggaggaagatgagaaggagaaagaggcaGCGGGGGGTGGCAGCAGCCCGAAGGTGTCCCCCAGACTAGGGCCTCTGAACGTGCTGGACCCCTTTGAGCTCTGCCATAACGTAGCAGGGAACCTGAATGAGCGAACCCAGAAGAGCTTCCTCCGGGAGTGCGCCGATGCGGCCAAGTACTGTCGCAGCCTGCAGTACCAGCGCAAGTCTGCAAAGGGAAAGGTGTGGGGCCTAGTGCGGCTGTTCTCCCCCCGCGGGCGCGGACAGGGGGCTGCAGAGGCCGAGAGAGAGCTGGTCATCGACATCCCCTTCAAACTGGTCGTGCTCCCCGAGAGCATGCGTGGGCAGCTGCGCGACGCCGGCGATGGCTTCCGGCAGCTGTGGTTTGGCAAAGTGTGCCGGGCTGTGGAGCGGGTGTTCCGGGAGATCCTGAAGTGTGATGTTACTGAGGgagcggaggaggaggaagatgaggagcggagggaggaagagaagcAGGCAGGAGCAGGGGACGGCCCTGAAGCAGTGAACACCGCAGAATGGGATCCGTCTGCGACTCCCGTGGGTCCGACCGAAGCTACTGAGGGCAGGCGGAAAGAGCAGGAGACAAACAACAATGACTGCCCCCAGACTGCTGTCTCCCCCAAAACCTGCAAGACGCTCAAGAGGCCCCGGCTCTCAAGGGAGGGCACCACGTCGATCTCCCCCATCACCAAGAAACAGCGTCTGGCCCTAGGGGACAGGCAGAGCGTGACGACCTGGCATGGCCACGTCTGGCACAAGGTGTGGGCAGGGCGCCGGAAAGTGCGGAGGGACCTGCTTAGGACCCTGCAGGAGCACGACAGGCCAGAGGGGGGCAGCGTGGAGCTGGAGACACAAGTGACCGAACGCATTGCGACGCTGGAGCAGGAAGGGGAGGGCGTGGCAGTGGGGGGGACGGCGATACTGGAGTTTGCGTTGCAGGCGCGGGTACTGGGGGCCACGGAGGACACCAAGACCGAGCTCTGCTTCTTCCCAGGGGAGGACACCTGCGGTCTGTTTCAGGACTTCTTCCACTTCCTGGAGTCCTTCCTGCCCAGGATGACGGAGAAGCTGCTGGAGAGGGCTGAGTAGAGGGAGTAGTGCCCTCTAGTGGAGGGAGTGCAGCATTCCCAGCCCCAGATAAATACTAAGAGCcaaatgctgctgctgctgctctacCCAAAGACTAGAAAGGAATTGACTTGTTTGAATTGTATTCATTAGAGTTGAGATTACAGTTCTTGTTACTGTTCCATGCTCTGACTTAAACAGGTATTGTATGTATTGAGACAATCTTTTTGCCAAGCTTtagagcaaaacaaatgtaaatggatTTTTAATACCATGGAAATCTAAAGCGTCTCACAGGgaaatatttttgtaacatgCCATCCCAGATCTATTTTTACATGCAAATGTGATGTCAATAAACGGGCATGCTTGtgacttgtttaaaaaaaa

Function

GO:

id name namespace
GO:0006378 mRNA polyadenylation biological_process
GO:0006379 mRNA cleavage biological_process
GO:0016180 snRNA processing biological_process
GO:0005847 mRNA cleavage and polyadenylation specificity factor complex cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005730 nucleolus cellular_component
GO:0003730 mRNA 3'-UTR binding molecular_function
GO:0004652 polynucleotide adenylyltransferase activity molecular_function
GO:0050265 RNA uridylyltransferase activity molecular_function

KEGG:

id description
K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18775 lncRNA downstream 179153 27550312 ~ 27553162 (-) True G15095
TU18755 lncRNA downstream 190475 27535325 ~ 27541840 (-) True G15079
TU18746 lncRNA downstream 307494 27424554 ~ 27424821 (-) True G15075
TU18745 lncRNA downstream 315776 27416249 ~ 27416539 (-) True G15074
TU18744 lncRNA downstream 316423 27415653 ~ 27415892 (-) True G15073
TU18848 lncRNA upstream 56163 27794592 ~ 27794980 (-) True G15165
TU18849 lncRNA upstream 58354 27796783 ~ 27797008 (-) True G15166
TU18858 lncRNA upstream 63700 27802129 ~ 27805042 (-) True G15172
TU18854 lncRNA upstream 72209 27810638 ~ 27815464 (-) True G15169
TU18892 lncRNA upstream 145210 27883639 ~ 27884430 (-) True G15200
AMCG00016694 mRNA downstream 24786 27701012 ~ 27707529 (-) True AMCG00016694
AMCG00016693 mRNA downstream 62903 27655748 ~ 27669412 (-) True AMCG00016693
AMCG00016692 mRNA downstream 81466 27643639 ~ 27650849 (-) True AMCG00016692
AMCG00016688 mRNA downstream 215342 27509645 ~ 27516973 (-) True AMCG00016688
AMCG00016681 mRNA downstream 298455 27430102 ~ 27433860 (-) True AMCG00016681
AMCG00016700 mRNA upstream 67920 27806349 ~ 27809112 (-) True AMCG00016700
AMCG00016701 mRNA upstream 101766 27840195 ~ 27842668 (-) True AMCG00016701
AMCG00016709 mRNA upstream 253218 27991647 ~ 27997674 (-) True AMCG00016709
AMCG00016713 mRNA upstream 353815 28092244 ~ 28107936 (-) True AMCG00016713
AMCG00016712 mRNA upstream 391625 28130054 ~ 28146016 (-) True AMCG00016712
TU18749 other downstream 303664 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 328393 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 362176 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 452981 27268820 ~ 27279334 (-) True AMCG00016671
TU18448 other downstream 1160674 26568669 ~ 26571641 (-) False G14843
TU19143 other upstream 1043043 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 2463030 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 2787863 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 4684629 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 4759078 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile