RNA id: AMCG00016696


Basic Information

Item Value
RNA id AMCG00016696
length 240
RNA type mRNA
GC content 0.61
exon number 1
gene id AMCG00016696
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27764574 ~ 27764813 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTTTACGGCCCACCGTCCCGGGGCTGTGCGTGATGTTGCAGACCATTTACGAGACGGAGTCCTGTCTCTCCTCAGACGGGGTCTCCAGCCGGGAGCAGCCCCTCGAAGTGCTGGTCAGGCCCCCGGTACACTCCGTCCCCAGCACCGGTGAGTGGTGGGCTGGGAGCAGTGAAGGATGGGTGGGGTGGAGTGTGATGGAGAAAAAAGAGGCAATCGTGGAGGAGAGTGCCTTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18718 lncRNA upstream 159699 27599810 ~ 27604875 (+) False AMCG00016691
TU18707 lncRNA upstream 219578 27542488 ~ 27544996 (+) False AMCG00016683
TU18672 lncRNA upstream 394436 27369589 ~ 27370138 (+) True G15025
TU18644 lncRNA upstream 482005 27281424 ~ 27282569 (+) True G15005
TU18626 lncRNA upstream 490277 27262890 ~ 27274297 (+) True G14992
TU18827 lncRNA downstream 32736 27797549 ~ 27799115 (+) False AMCG00016699
TU18859 lncRNA downstream 71700 27836513 ~ 27839103 (+) True AMCG00016706
TU18885 lncRNA downstream 227249 27992062 ~ 27992282 (+) False AMCG00016707
TU18886 lncRNA downstream 227775 27992588 ~ 27992792 (+) False AMCG00016707
TU18926 lncRNA downstream 352105 28116918 ~ 28117190 (+) True G15224
AMCG00016690 mRNA upstream 138484 27613301 ~ 27626090 (+) True AMCG00016690
AMCG00016689 mRNA upstream 153802 27607216 ~ 27610772 (+) True AMCG00016689
AMCG00016691 mRNA upstream 159695 27590643 ~ 27604879 (+) True AMCG00016691
AMCG00016687 mRNA upstream 179593 27576533 ~ 27584981 (+) True AMCG00016687
AMCG00016683 mRNA upstream 211454 27542486 ~ 27553120 (+) True AMCG00016683
AMCG00016699 mRNA downstream 12614 27777427 ~ 27799126 (+) True AMCG00016699
AMCG00016698 mRNA downstream 45835 27810648 ~ 27817193 (+) True AMCG00016698
AMCG00016697 mRNA downstream 57860 27822673 ~ 27823994 (+) True AMCG00016697
AMCG00016705 mRNA downstream 64552 27829365 ~ 27833537 (+) False AMCG00016705
AMCG00016706 mRNA downstream 71888 27836701 ~ 27837772 (+) False AMCG00016706
TU18724 other upstream 144655 27613105 ~ 27619919 (+) False AMCG00016690
TU18716 other upstream 164982 27588479 ~ 27599592 (+) False AMCG00016691
TU18717 other upstream 165926 27588479 ~ 27598648 (+) False AMCG00016691
TU18699 other upstream 216965 27545994 ~ 27547609 (+) False AMCG00016683
TU18379 other upstream 1107149 26605526 ~ 26657425 (+) False AMCG00016635
TU18835 other downstream 64455 27829268 ~ 27831694 (+) True AMCG00016705
TU18876 other downstream 107850 27872663 ~ 27878697 (+) True AMCG00016702
TU18924 other downstream 339924 28104737 ~ 28105711 (+) True G15223
TU19419 other downstream 2308125 30072938 ~ 30074896 (+) False AMCG00016772
TU19422 other downstream 2316441 30081254 ~ 30083528 (+) False AMCG00016772

Expression Profile