RNA id: AMCG00016698


Basic Information

Item Value
RNA id AMCG00016698
length 812
RNA type mRNA
GC content 0.48
exon number 5
gene id AMCG00016698
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27810648 ~ 27817193 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGCGGAGAAGATGGCGGCTCCTGGACCGGGGGAGTACTTCAGTGTCGGCAGCCAGGTCTCCTGCCTCACTTGCTTGGGACAGCGTCTGCAAGGGGAGGTCGTCGCCTTCGACTACCAGTCCAAGATGCTGACTTTGAAATGCACCTCCTCCAGCGGCAAGCCTAACCTCAGCGACGTCATCCTGATTAATTTAGCCTACgtttcagaagtggatataataAACGACCGCACTGAGACGCCTCCTCCTCTAGCATCGCTGAATGTTAATAAGCTTGCCAACCGAGCACGGACAGAAAAGGAGGACAAGCTGTCCCAAGCATATGCAATAAGTGCTGGAGTGTCAGTGGAGGGACAGCAGCTCTTTCAGACCATACACAAAACCATCAAAGACTGTAAATGGCAGGAGAAGAACATAATTGTAATGGACGACGTCGTTATCGCCCCACCTTACCAGGTTGAGAACTGCAAAGGCAAAGAGGGCAGCGCTTTGAGTCACGTACGCAAAATAGTTGAGAAACATTTTAGAGATGTGGAAAGTCAGAGGTTGATGCTGCATTCACAAGCACAACAAACACAGAAGGACTCCACCTTATCATCCTGAGCCCGCGACTCCTCCAGAAGGCCATGCGTTTCCACTGCCAGGCGAGGCACGATTTCTCCCTCCCATCTGTCTGAGGCAGTGCGGGGGGCTAGATCCATTCATGTCTGGGAGactgaaaccatttaaaaaaacaaaacaaaaaaaaagaaaaagcgagagagaaaaagagaaaaaaaaaaaatgaaattagacttttaaaaaaaaaataa

Function

GO: NA

KEGG:

id description
K23643 LSM12; protein LSM12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18827 lncRNA upstream 11533 27797549 ~ 27799115 (+) False AMCG00016699
TU18718 lncRNA upstream 205773 27599810 ~ 27604875 (+) False AMCG00016691
TU18707 lncRNA upstream 265652 27542488 ~ 27544996 (+) False AMCG00016683
TU18672 lncRNA upstream 440510 27369589 ~ 27370138 (+) True G15025
TU18644 lncRNA upstream 528079 27281424 ~ 27282569 (+) True G15005
TU18859 lncRNA downstream 19320 27836513 ~ 27839103 (+) True AMCG00016706
TU18885 lncRNA downstream 174869 27992062 ~ 27992282 (+) False AMCG00016707
TU18886 lncRNA downstream 175395 27992588 ~ 27992792 (+) False AMCG00016707
TU18926 lncRNA downstream 299725 28116918 ~ 28117190 (+) True G15224
TU18928 lncRNA downstream 301350 28118543 ~ 28119649 (+) True G15226
AMCG00016699 mRNA upstream 11522 27777427 ~ 27799126 (+) True AMCG00016699
AMCG00016696 mRNA upstream 45835 27764574 ~ 27764813 (+) True AMCG00016696
AMCG00016690 mRNA upstream 184558 27613301 ~ 27626090 (+) True AMCG00016690
AMCG00016689 mRNA upstream 199876 27607216 ~ 27610772 (+) True AMCG00016689
AMCG00016691 mRNA upstream 205769 27590643 ~ 27604879 (+) True AMCG00016691
AMCG00016697 mRNA downstream 5480 27822673 ~ 27823994 (+) True AMCG00016697
AMCG00016705 mRNA downstream 12172 27829365 ~ 27833537 (+) False AMCG00016705
AMCG00016706 mRNA downstream 19508 27836701 ~ 27837772 (+) False AMCG00016706
AMCG00016703 mRNA downstream 44996 27862189 ~ 27871186 (+) True AMCG00016703
AMCG00016702 mRNA downstream 60255 27877448 ~ 27878030 (+) False AMCG00016702
TU18724 other upstream 190729 27613105 ~ 27619919 (+) False AMCG00016690
TU18716 other upstream 211056 27588479 ~ 27599592 (+) False AMCG00016691
TU18717 other upstream 212000 27588479 ~ 27598648 (+) False AMCG00016691
TU18699 other upstream 263039 27545994 ~ 27547609 (+) False AMCG00016683
TU18379 other upstream 1153223 26605526 ~ 26657425 (+) False AMCG00016635
TU18835 other downstream 12075 27829268 ~ 27831694 (+) True AMCG00016705
TU18876 other downstream 55470 27872663 ~ 27878697 (+) True AMCG00016702
TU18924 other downstream 287544 28104737 ~ 28105711 (+) True G15223
TU19419 other downstream 2255745 30072938 ~ 30074896 (+) False AMCG00016772
TU19422 other downstream 2264061 30081254 ~ 30083528 (+) False AMCG00016772

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00009884 True 1198 mRNA 0.44 5 NC_007123.7 3287783 ~ 3299149 (-)
grasscarp (Ctenopharyngodon idella) CI01000047_04596548_04605172.mRNA True 1222 mRNA 0.44 5 CI01000047 4595980 ~ 4605172 (-)