RNA id: AMCG00016701


Basic Information

Item Value
RNA id AMCG00016701
length 651
RNA type mRNA
GC content 0.60
exon number 4
gene id AMCG00016701
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27840195 ~ 27842668 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGATGCTGTTCGCGGAGCGCGCTGACGTCAACAGGAAGCCTGACATCCAGGTGCCCTACCTGTATGTGGAAATGGGGGTATCGGTGCTGTGCGCCAGCTTCATGTCCTTCGGGGTGAAGAGGAGATGGTTTGCGATGGGCGCTGCCCTACAGTTAGCCGTGAGCACCTACGCGTCGTACATCGGAGGGCAGGTGCACTATGGAGAGTGGCTGAAGGTGCGGATGTATTCCAGGGCCATCGCAGTAATTGGCGGCTTCCTCGTTCTGGCCAGTGGAGCAGGAGAGGTGTACCGGCAGAAACCTCGCACCAGATCAATGCAGTCTACCGGCCAGGTCTTCATCGGCATCTACTTGATCTGTGTGGAGGACAGGCTGGCCTATCTGAGCCACATCCCCGGGGGCGAGATCACTCTGCAGCTGCTGTTCGTGCTGTACGGTGTGCTGGCCCTGTCCTTCCTCTCTGGCTACTACTTGCGCCTGGCCGCCCAGATCCTGgccacactgctgcccctgGTTGTCCTCTTCATTGACGGCAACCTCGGCTACTGGCACCACACCCGGCGGGTGGAATTCTGGAACCAGCTGAAGCTAATCGGGCAGAATGCCGGGATCTTCGGGGCCGTGCTTATCCTGGCCACTGACGGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18854 lncRNA downstream 24731 27810638 ~ 27815464 (-) True G15169
TU18858 lncRNA downstream 35153 27802129 ~ 27805042 (-) True G15172
TU18849 lncRNA downstream 43187 27796783 ~ 27797008 (-) True G15166
TU18848 lncRNA downstream 45215 27794592 ~ 27794980 (-) True G15165
TU18775 lncRNA downstream 287033 27550312 ~ 27553162 (-) True G15095
TU18892 lncRNA upstream 40971 27883639 ~ 27884430 (-) True G15200
TU18893 lncRNA upstream 42418 27885086 ~ 27886560 (-) True G15201
TU18895 lncRNA upstream 43294 27885962 ~ 27886560 (-) False G15201
TU18906 lncRNA upstream 121875 27964543 ~ 27966856 (-) True G15207
TU18901 lncRNA upstream 136878 27979546 ~ 27988429 (-) True G15206
AMCG00016700 mRNA downstream 31083 27806349 ~ 27809112 (-) True AMCG00016700
AMCG00016695 mRNA downstream 101766 27732315 ~ 27738429 (-) True AMCG00016695
AMCG00016694 mRNA downstream 132666 27701012 ~ 27707529 (-) True AMCG00016694
AMCG00016693 mRNA downstream 170783 27655748 ~ 27669412 (-) True AMCG00016693
AMCG00016692 mRNA downstream 189346 27643639 ~ 27650849 (-) True AMCG00016692
AMCG00016709 mRNA upstream 148979 27991647 ~ 27997674 (-) True AMCG00016709
AMCG00016713 mRNA upstream 249576 28092244 ~ 28107936 (-) True AMCG00016713
AMCG00016712 mRNA upstream 287386 28130054 ~ 28146016 (-) True AMCG00016712
AMCG00016714 mRNA upstream 305159 28147827 ~ 28148678 (-) True AMCG00016714
AMCG00016719 mRNA upstream 353759 28196427 ~ 28209980 (-) True AMCG00016719
TU18749 other downstream 411544 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 436273 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 470056 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 560861 27268820 ~ 27279334 (-) True AMCG00016671
TU18448 other downstream 1268554 26568669 ~ 26571641 (-) False G14843
TU19143 other upstream 938804 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 2358791 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 2683624 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 4580390 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 4654839 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile