RNA id: AMCG00016702


Basic Information

Item Value
RNA id AMCG00016702
length 216
RNA type mRNA
GC content 0.52
exon number 2
gene id AMCG00016702
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27872663 ~ 27878697 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCAACATGGCTCGTGACCTGACAGATAAGGAGTTGGTCAAAATGGAACTGGAGCAGCTGCAGAAGGAGGTGAAAACCGAGAGGATGCTGGTGTCCAAAACAGCCAAGGAGCTGGTAGAATATATGGAGTCCCAGGCTGCTGAGGACCCCCTCCTCAAAGGTGTTCCAGAAGACAAGAATCCCTACAAGGAGAAGGGGGGCTGCACAATAACCTAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18859 lncRNA upstream 38345 27836513 ~ 27839103 (+) True AMCG00016706
TU18827 lncRNA upstream 78333 27797549 ~ 27799115 (+) False AMCG00016699
TU18718 lncRNA upstream 272573 27599810 ~ 27604875 (+) False AMCG00016691
TU18707 lncRNA upstream 332452 27542488 ~ 27544996 (+) False AMCG00016683
TU18672 lncRNA upstream 507310 27369589 ~ 27370138 (+) True G15025
TU18885 lncRNA downstream 114032 27992062 ~ 27992282 (+) False AMCG00016707
TU18886 lncRNA downstream 114558 27992588 ~ 27992792 (+) False AMCG00016707
TU18926 lncRNA downstream 238888 28116918 ~ 28117190 (+) True G15224
TU18928 lncRNA downstream 240513 28118543 ~ 28119649 (+) True G15226
TU18958 lncRNA downstream 282635 28160665 ~ 28160887 (+) True G15253
AMCG00016703 mRNA upstream 6262 27862189 ~ 27871186 (+) True AMCG00016703
AMCG00016706 mRNA upstream 39676 27836701 ~ 27837772 (+) False AMCG00016706
AMCG00016705 mRNA upstream 43911 27829365 ~ 27833537 (+) False AMCG00016705
AMCG00016697 mRNA upstream 53454 27822673 ~ 27823994 (+) True AMCG00016697
AMCG00016698 mRNA upstream 60255 27810648 ~ 27817193 (+) True AMCG00016698
AMCG00016704 mRNA downstream 3410 27881440 ~ 27888212 (+) True AMCG00016704
AMCG00016707 mRNA downstream 86548 27964578 ~ 27998777 (+) True AMCG00016707
AMCG00016710 mRNA downstream 128254 28006284 ~ 28028274 (+) True AMCG00016710
AMCG00016708 mRNA downstream 161994 28040024 ~ 28051031 (+) True AMCG00016708
AMCG00016711 mRNA downstream 195565 28073595 ~ 28090180 (+) True AMCG00016711
TU18835 other upstream 45754 27829268 ~ 27831694 (+) True AMCG00016705
TU18724 other upstream 257529 27613105 ~ 27619919 (+) False AMCG00016690
TU18716 other upstream 277856 27588479 ~ 27599592 (+) False AMCG00016691
TU18717 other upstream 278800 27588479 ~ 27598648 (+) False AMCG00016691
TU18699 other upstream 329839 27545994 ~ 27547609 (+) False AMCG00016683
TU18924 other downstream 226707 28104737 ~ 28105711 (+) True G15223
TU19419 other downstream 2194908 30072938 ~ 30074896 (+) False AMCG00016772
TU19422 other downstream 2203224 30081254 ~ 30083528 (+) False AMCG00016772
TU19434 other downstream 2231569 30109599 ~ 30113284 (+) True AMCG00016770
TU19453 other downstream 2358424 30236454 ~ 30236841 (+) True G15659

Expression Profile