RNA id: AMCG00016704


Basic Information

Item Value
RNA id AMCG00016704
length 2670
RNA type mRNA
GC content 0.50
exon number 11
gene id AMCG00016704
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27881440 ~ 27888212 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tccctcAGACTCCTGGAACGTCTCCCTGGCTCCACCGATAGCCAAGTTCTCTGTGCTCTGCTGGAAGATGTGGCTCGTGCTGCTTCTGGGGGCTGGAGGcctggtcctggtcctgggCTTCACTGTTTACTACTGCATGATCGGCAGCAAAGTCAGCCCGTTCTCCCTGGACTCGGTGCGTCCGCCTGGGCCGCTGGTGACGGaccagaggcagagagacagagtgctGAAGCAAGGATTCAGCATGGATCGGGTGCCATCAAACCTGAATGCCATTGTGATTGGCAGTGGAATTGGTGGGCTGACTGCAGCGGCGGTTTTGGCCAAGACTGGTAAACGGGTGCTGGTGCTGGAGCAACATGATCAGGCTGGGGGCTGTTGCCACTCCTATGCAGAGAAAGGCTTCGAGTTTGATGTCGGGCTGCACTACCTGGGCCAGCTCCACGAGAACAGCCTGCTGCGCATCGCTGTGGACCAGATCACCGAGGGGCAGCTGCAGTTCGCACAGCTGGAGCAGCACTTTGACACCATCGTCATTGGGGACAAGCAGAACAGCCGCCACTACCACATCCACAGTGGCAAGACCGAGATGGCGGAGAACCTGAAGCGACAGTTCCCCGAGGACACTGAGGCCATTGACAAGTTCATGACGCTAATGAAGGTAGCAGCTCGAAAGACACACTACCTGGCCATGTTGAAGTTGATTCCCCTCTGGCTGGCTCTGTTCCTCATCAAGTCACGCCTCGTTCACTGCTTCTCCTCCATCTTTCGACTGTCCGGCTCCAGCCACACAGAGAAGGCAGGGGGTGCTGTGCTAGTCAGAGCTCCCGTCCAGCGCATCCTAGTGAACCAGCAGGGCACAGCATACGGTGTGACCGTGAAGAAGGGTCAGGAAGAGGTCAGCATCCTGGCCCCAGTGGTCATCTCCAACACTGGGATCCTGGTTCGCCAGGGCATGGGCTCCTTCCTGGTGTTTGTGGGTCTGGATGGGACTCAGGAGGAACTTGGCATCGTCTCCACCAACTTCTGGCTgtttaagaacaacaacatgGATGAATCGATGGATCGCTTCTTCTCTCTGGACCGGGAAGAGGTGGCGGCCAACGTCCCCATGATGTTCATTACCTTCCCCTCAGCTAAAGACCCCACCTCCAGCATCAGACACCCAGGGAAGTCATGCATGACTCTGCTGACTATGGTTCGCTATGAGTGGTTTGAGGAGTGGAAGGACACCACTGTGAAAAAGAGAGGGCCTGACTATGAGAACCTCAAGATGGGCATCGCCAACGCACTCCTGGACTGGGCCTGCGAGATCCATCCCCAGATCAGGGAGAAGgtggTGTTCATGGAAGCTGCCACCCCTCTCTCCAACATGCACTACCTGGGCGCACCGCGGGGAGAGATGTATGGGGCTGAGCACAACCTGGCCAGGTTCTTCCCTGAGACGGTGGCCAGGATCCGGGCAGAGACGCCAGTCAAGAACCTGTACATCTCAGGCCAGGATGTGTTCTGTAATGGTGTGGCGGGGGCTCTGCATGGGGGGCTGCTCTGTGCCGCGGCTGTGCTCGACCACATCATCTACATCGACCTGCTCCTGCTCAAGAAGAGACTCAAGAGGGAGAAGGCAAGAAAGCAAGCCTGAGCCCACAGCTCCATCTGCTGGACAGAGACAACATTACCGTTCTCCAGAAAAAATGATAAACACAATAGAACAGTGGCTACCGTCACACAATGTGGTTGGGAAGGTTAAAATGCAGACCTacgcagaaatatatatttgttttattaaaatatatagataaaactgtggtggaaaataaaatgaaagcaaatactCTGTGAATGTGGCCATGGACAGGGCTGCTCTGTCCTGCCTGTGATCtggaaggagacagagagaaaataatggaTCATAAGTTACCCCATTAGGAGCACAATGTTGCACTTAAGCAGCACATAACAACTCATGTTTAaacctatatatacatatttaaacacaaacacattttcacaaagtCAACACACTGGCCAAACCACTGAATGCTACTaagataaacatttatattttttatttgtctctttaaatacacacacaattcacacaTACTCACAGTTTGTAGGAATGCatataatgtttcttttgtttactTGCCAGTCATTGTTTGTACATTGTTGTCTTCATTGTTCACTTCGTAGAGCAGAGGGACTTCAGTGATCTGAGCCAAAGTGTGGCCCCTGTGCCACAAGAAACAAAGGTGTTCAGTTCTGGTGTGTTTTGAGACATTGCATATAGTATTGGCCCAAGATGGAGTGGGCTCATTCAGGTTAATCCTACTGTATGAAATCATTGAAAAGGAAACTACTGTCATCCCTGTGTTAAAGTAGtcataacaaattaatattgatGAGAAGCCATTGAAGAGACTGAAGGATTGATGGCCTGTAGTCACTCAGCCAGGTCCATTCTTGCTTCTCCAGTTCATGTTGCAAGACATATATTACTAATTGCTCCATTACTTAACACAGTTCATGCATgagatttaaaacacaaatattgatTCATCATGCTAGAAATGtatacacttaaaataaaataaatccatctaTCTACTTATATATTTTGCTGTTCACCTATGTGTTTAGGGTGCCTCTCTGCATGGTTTAACCACA

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18859 lncRNA upstream 42337 27836513 ~ 27839103 (+) True AMCG00016706
TU18827 lncRNA upstream 82325 27797549 ~ 27799115 (+) False AMCG00016699
TU18718 lncRNA upstream 276565 27599810 ~ 27604875 (+) False AMCG00016691
TU18707 lncRNA upstream 336444 27542488 ~ 27544996 (+) False AMCG00016683
TU18672 lncRNA upstream 511302 27369589 ~ 27370138 (+) True G15025
TU18885 lncRNA downstream 103850 27992062 ~ 27992282 (+) False AMCG00016707
TU18886 lncRNA downstream 104376 27992588 ~ 27992792 (+) False AMCG00016707
TU18926 lncRNA downstream 228706 28116918 ~ 28117190 (+) True G15224
TU18928 lncRNA downstream 230331 28118543 ~ 28119649 (+) True G15226
TU18958 lncRNA downstream 272453 28160665 ~ 28160887 (+) True G15253
AMCG00016702 mRNA upstream 3410 27877448 ~ 27878030 (+) False AMCG00016702
AMCG00016703 mRNA upstream 10254 27862189 ~ 27871186 (+) True AMCG00016703
AMCG00016706 mRNA upstream 43668 27836701 ~ 27837772 (+) False AMCG00016706
AMCG00016705 mRNA upstream 47903 27829365 ~ 27833537 (+) False AMCG00016705
AMCG00016697 mRNA upstream 57446 27822673 ~ 27823994 (+) True AMCG00016697
AMCG00016707 mRNA downstream 76366 27964578 ~ 27998777 (+) True AMCG00016707
AMCG00016710 mRNA downstream 118072 28006284 ~ 28028274 (+) True AMCG00016710
AMCG00016708 mRNA downstream 151812 28040024 ~ 28051031 (+) True AMCG00016708
AMCG00016711 mRNA downstream 185383 28073595 ~ 28090180 (+) True AMCG00016711
AMCG00016720 mRNA downstream 266550 28154762 ~ 28181038 (+) True AMCG00016720
TU18876 other upstream 2743 27872663 ~ 27878697 (+) True AMCG00016702
TU18835 other upstream 49746 27829268 ~ 27831694 (+) True AMCG00016705
TU18724 other upstream 261521 27613105 ~ 27619919 (+) False AMCG00016690
TU18716 other upstream 281848 27588479 ~ 27599592 (+) False AMCG00016691
TU18717 other upstream 282792 27588479 ~ 27598648 (+) False AMCG00016691
TU18924 other downstream 216525 28104737 ~ 28105711 (+) True G15223
TU19419 other downstream 2184726 30072938 ~ 30074896 (+) False AMCG00016772
TU19422 other downstream 2193042 30081254 ~ 30083528 (+) False AMCG00016772
TU19434 other downstream 2221387 30109599 ~ 30113284 (+) True AMCG00016770
TU19453 other downstream 2348242 30236454 ~ 30236841 (+) True G15659

Expression Profile