RNA id: TU18885


Basic Information

Item Value
RNA id TU18885
length 221
lncRNA type sense_over
GC content 0.44
exon number 1
gene id AMCG00016707
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27964578 ~ 27998777 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCTGGGCCAGGATGAGGGGGATGTGGGCGCTGTCGGAGCGGAAGGGCCTCTGCAGGGGGGGCACCCTATCCCCGGTGCGGGCGTTGAACATGGGGAGCGTGGAGAGGGGCCGGGGGACCCCGCGGCTGCCAGCCATGATCCTCAGCTCATCTGTGTTGTCATGGATGGTGTGATGGTGGTGCAGCTGGATACTGAGGCCAAGAGGGAGGAGAAGTTTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18859 lncRNA upstream 152959 27836513 ~ 27839103 (+) True AMCG00016706
TU18827 lncRNA upstream 192947 27797549 ~ 27799115 (+) False AMCG00016699
TU18718 lncRNA upstream 387187 27599810 ~ 27604875 (+) False AMCG00016691
TU18707 lncRNA upstream 447066 27542488 ~ 27544996 (+) False AMCG00016683
TU18672 lncRNA upstream 621924 27369589 ~ 27370138 (+) True G15025
TU18886 lncRNA downstream 306 27992588 ~ 27992792 (+) False AMCG00016707
TU18926 lncRNA downstream 124636 28116918 ~ 28117190 (+) True G15224
TU18928 lncRNA downstream 126261 28118543 ~ 28119649 (+) True G15226
TU18958 lncRNA downstream 168383 28160665 ~ 28160887 (+) True G15253
TU18980 lncRNA downstream 233560 28225842 ~ 28230979 (+) True G15270
AMCG00016704 mRNA upstream 103850 27881440 ~ 27888212 (+) True AMCG00016704
AMCG00016702 mRNA upstream 114032 27877448 ~ 27878030 (+) False AMCG00016702
AMCG00016703 mRNA upstream 120876 27862189 ~ 27871186 (+) True AMCG00016703
AMCG00016706 mRNA upstream 154290 27836701 ~ 27837772 (+) False AMCG00016706
AMCG00016705 mRNA upstream 158525 27829365 ~ 27833537 (+) False AMCG00016705
AMCG00016710 mRNA downstream 14002 28006284 ~ 28028274 (+) True AMCG00016710
AMCG00016708 mRNA downstream 47742 28040024 ~ 28051031 (+) True AMCG00016708
AMCG00016711 mRNA downstream 81313 28073595 ~ 28090180 (+) True AMCG00016711
AMCG00016720 mRNA downstream 162480 28154762 ~ 28181038 (+) True AMCG00016720
AMCG00016722 mRNA downstream 288216 28280498 ~ 28286427 (+) True AMCG00016722
TU18876 other upstream 113365 27872663 ~ 27878697 (+) True AMCG00016702
TU18835 other upstream 160368 27829268 ~ 27831694 (+) True AMCG00016705
TU18724 other upstream 372143 27613105 ~ 27619919 (+) False AMCG00016690
TU18716 other upstream 392470 27588479 ~ 27599592 (+) False AMCG00016691
TU18717 other upstream 393414 27588479 ~ 27598648 (+) False AMCG00016691
TU18924 other downstream 112455 28104737 ~ 28105711 (+) True G15223
TU19419 other downstream 2080656 30072938 ~ 30074896 (+) False AMCG00016772
TU19422 other downstream 2088972 30081254 ~ 30083528 (+) False AMCG00016772
TU19434 other downstream 2117317 30109599 ~ 30113284 (+) True AMCG00016770
TU19453 other downstream 2244172 30236454 ~ 30236841 (+) True G15659

Expression Profile