RNA id: AMCG00016708



Basic Information


Item Value
RNA id AMCG00016708
length 1220
RNA type mRNA
GC content 0.59
exon number 10
gene id AMCG00016708
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28040024 ~ 28051031 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ccattcttgatggtgtgtgtgtggggagcaGGTCCCATGATGCTGCCCCTGTGACACTTATGGTATACCTTCTCCCATTGGACTTCCTCTCCCTGGATAACAATCACATGGTGTTCACCACTTACTCCAACGAGGACTACGACCGGCGCAATGATGACGTGGATCCCATGGCTGCCTCAGCAGAGTACGAGTTGGAGAAGAGGGTGGAGAGACTGGACTTGTTCCCTGTGGAGCTGGAGAAAGatggagaTGGCCTTGGAATCAGTATTATTGGGATGGGGGCAGGAGCGGACATGGGACTAGAGAAACTGGGCATCTTTGTGAAGACCGTCACCGAGGGAGGGGCAGCACACAGGGATGGCAGGATCCAGGTGAATGACCTCATCGTGGAAGTGGACGGGACCAGCCTGGTCGGGGTCACCCAGAGTTTCGCAGCCTCAGTGCTGAGGAACACCAAAGGCAAAGTCAGATTCCTGATTGGCCGGGAGAAGCCGGGCGAGCAGAGTGAAGTGGCGCAGCTCATCCAGCAGACCCTGGAGCAGGAGCGTTGGCAGAGGGAGATGATGGAACAGCGCTATGCTCAGTACGTGGAGGACGAGGATGAGACTGGCGAGTACGCCacggacgaggaggaggagatgagcCCCATGTTCCCCAACGCAGAGATGGCCATCGAGGTGTTCGACCTGGCCGAGAACGAGGACATGCTGTCCCCTGTCGAGATGGACCCGGAGAAGCTGGCTCACAAGTTCAAGGAGGTTCTCCAGATAAAGCATGCGGTCACAGAGGCTGAAATTCAGCAGCTGAAGAGGAAGCTAACGCAGGCGGAGCAGGAGAAGCTGCGCTGGCGCATGGAGAAGGCACAGCTGGAGCAGAGCGTGCAGGAGAACAAGGAGCGCATGGAGAAGCTGGAGGGCTACTGGATGGAGGCGCAGAGTCTTTGCCAGGCCGTGGACGAGCACCTGAAGGAGACGCAGGCCCAGTACCAGACGCTGGAGCGCAAGTACAGCAAGGCCAAGCGCCTCATCAAGGAGTACCAGCAGAAGGAGATCGAGTACCTGAAGAAGGAGACGGCCCAGCGCCGGGCCCTGGAGGAGTCTGAGGCTTCTCACAAGGAGGAGGCCGACCAGCTGCAGGACAAGGTAGTGCCGGACCCGCAGGTGAAGACTCagaggggggatgggggggtgtgggggcagGCTGGGGAACTGTTGAGCATG

Function


GO: NA

KEGG:

id description
K17551 PPP1R9; neurabin

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU18886 lncRNA upstream 47232 27992588 ~ 27992792 (+) False AMCG00016707
TU18885 lncRNA upstream 47742 27992062 ~ 27992282 (+) False AMCG00016707
TU18859 lncRNA upstream 200921 27836513 ~ 27839103 (+) True AMCG00016706
TU18827 lncRNA upstream 240909 27797549 ~ 27799115 (+) False AMCG00016699
TU18718 lncRNA upstream 435149 27599810 ~ 27604875 (+) False AMCG00016691
TU18926 lncRNA downstream 65887 28116918 ~ 28117190 (+) True G15224
TU18928 lncRNA downstream 67512 28118543 ~ 28119649 (+) True G15226
TU18958 lncRNA downstream 109634 28160665 ~ 28160887 (+) True G15253
TU18980 lncRNA downstream 174811 28225842 ~ 28230979 (+) True G15270
TU19065 lncRNA downstream 383953 28434984 ~ 28435256 (+) True G15328
AMCG00016710 mRNA upstream 11750 28006284 ~ 28028274 (+) True AMCG00016710
AMCG00016707 mRNA upstream 41247 27964578 ~ 27998777 (+) True AMCG00016707
AMCG00016704 mRNA upstream 151812 27881440 ~ 27888212 (+) True AMCG00016704
AMCG00016702 mRNA upstream 161994 27877448 ~ 27878030 (+) False AMCG00016702
AMCG00016703 mRNA upstream 168838 27862189 ~ 27871186 (+) True AMCG00016703
AMCG00016711 mRNA downstream 22564 28073595 ~ 28090180 (+) True AMCG00016711
AMCG00016720 mRNA downstream 103731 28154762 ~ 28181038 (+) True AMCG00016720
AMCG00016722 mRNA downstream 229467 28280498 ~ 28286427 (+) True AMCG00016722
AMCG00016721 mRNA downstream 257571 28308602 ~ 28345826 (+) True AMCG00016721
AMCG00016728 mRNA downstream 607901 28658932 ~ 28660893 (+) True AMCG00016728
TU18876 other upstream 161327 27872663 ~ 27878697 (+) True AMCG00016702
TU18835 other upstream 208330 27829268 ~ 27831694 (+) True AMCG00016705
TU18724 other upstream 420105 27613105 ~ 27619919 (+) False AMCG00016690
TU18716 other upstream 440432 27588479 ~ 27599592 (+) False AMCG00016691
TU18924 other downstream 53706 28104737 ~ 28105711 (+) True G15223
TU19419 other downstream 2021907 30072938 ~ 30074896 (+) False AMCG00016772
TU19422 other downstream 2030223 30081254 ~ 30083528 (+) False AMCG00016772
TU19434 other downstream 2058568 30109599 ~ 30113284 (+) True AMCG00016770
TU19453 other downstream 2185423 30236454 ~ 30236841 (+) True G15659

Expression Profile