RNA id: AMCG00016710


Basic Information

Item Value
RNA id AMCG00016710
length 2049
RNA type mRNA
GC content 0.63
exon number 4
gene id AMCG00016710
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28006284 ~ 28028274 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGAAGACTGAATCCCCGTCCGCAGCCAGCGCCCCCAGCACCACCTCCAACCTGAGGAGCCCTTCCCCACACCGAAACGCGTACGAGGCTGGCATCCAGGCACTAAAGCAGGCGAAGGATGCCCTCAATGCTGCGAACGGGGATGAAACCCGGGAATGCAGACCCAAGCCCAACTCCCGCGGCCGGAGGTACGGCTCCAACGTCCACCGCATCAAGAACATGTTCCTGCAGATGGGCTCCTCTGTGCCGGGGGAGGGCGAGGACCCGGCGAAGATGAAGGACAGGTCGGTGCGCCTGTCTCTCCCCAGGGCCAGCAGCCTGAATGAGAATGTGGACCACAGTGCGCTGCTGAAGCTGGGTGCCACCGTCTCTGAGCGCGTCAGCCGCTTTGACTCCAAAGTGGAGGGTCAACCGCGGCAGCCGTCGGGTTTCTCCAAACTGCAGGAGACGCGCAAGATCTTTGAGCAGCGCCACTTACAGGAGAAGCAGGCGGCCACCAACCGCATCCTGCTCAAGAAAGAGCGGGCCTCAGGCTTTCAGGACAGCCGGCTGGACGTGGTGGTGCGTTTCAATGGCAGCACAGAGTCTCTGGACAGTTTGGACGCGGGGGGCACCGGGGAGGCAGTCTCCCCCACCGTCAGCCAACTGAGTGCCGTGTTTGAGAAGGCTGACCTCCGTAACAACCTGCACCggccccccacctccccattGCCCTCCCGGGGGGTCAGCCCACCACCAGGGAAGGTCGGGGTGCTGAACTCCAAAATCATCACCAAGAGGGCACGGGTCTTCCCCCCCGCCACGCAGGAGGAGGGCGGTAGCCCGGCGGCGCTGGGGCGAGTGAAGGATCAAGACGGCTCTCCCAGTGGCAGGGTCAGGGCAGCAGCCAGGAAGGAGGACGGCTTCTCCTCTGAGGGGGCGAGCCGAGCCTCGGCCGCAGAAGAGCTGCGCAAGATCAGACCGGTGGAAGTGGAAGAGAGCAGAGAGGAGTCTGAGGGGGTTGAGGCGGGGTCTGCAGGCGACACAGGAGCCACATCCGGGGACCAAGAGGAGAGCAGCGCCTCTGAGGGTGGGAGCCGGCTGGTGCAGGCGGAGGTGCACGCCTCCCTGGAAAACGGGGAGGCTGTCTCCGAGCGAGAGTCCTTCAAGACCCCGGGCTCCGAAGCCTCAGGAGGAGCAGAGGAtgaggaggagcagcaggagcaaggtgaggagggaggaaggggCAGAGACGGGGAGCTGTGCGAGGGCCTGGGGGACTCTCCTCAGGGGGAGGACATGTGCGAGGAGTCACGCAAGGAGGATTACTCCGAGGCCGACCTGGTGGATATCAGCGCCTACAGTGGGATCGGCGAGGACTCGGGCGGCAGCCAGCTggacgaggacgaggaggctgaggaggaagaggatgagCCCTACGAGCCGGAGTCCAGCTGTTCCGAGATGCCCGGGCTGCCTGCTGAGGAGGAGACGCCACCCAGCCGCAAGATCCGCTTCAGCACTGGGCCCATCAAGAGCTGCTGCACGGCAAAGCGAGACCTCTGTCTGTCCTGTAAGCGTCTagttgcagcagcagcagcagcagcactgaaatGGCACTTCCTGGGGCTGAGGAGATGGAAACCCCAGCGCCTCTCAAGCCCTGCAGTTTTGGCCTTTGAGTCCGAAAGTGATTCTGCGGGGCCCCGTCAGCCTGTGGGACCCTCCAAATCGACGTCTTTGGGCAAGGTGGCCCTGTCCTACTTCAGCAGCCGTGCAGAACGCAGCAATGCTGAGACAGATCTGCCTGGGGCCCAGTCCAGAGGCAACGAACCAGATGCTCAGGATCCCTGCAAAGAGATGTCTGCTCATCACTCCCCACTCCTGCAGCCGCTTGTATCGAAACTGCTGACGATTACCGACCTAGCATCTGCACCTAATTTAACTTCCATCTCGCTCTGTCAGGGAATGGTGACTGCAGAACGGTCCGTGTCTTCTCATTACTGCAAGGAGCaccccttccccctctcccgGGCCCTCTACTGGAGGCAGCTCAAGCGATTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18886 lncRNA upstream 13492 27992588 ~ 27992792 (+) False AMCG00016707
TU18885 lncRNA upstream 14002 27992062 ~ 27992282 (+) False AMCG00016707
TU18859 lncRNA upstream 167181 27836513 ~ 27839103 (+) True AMCG00016706
TU18827 lncRNA upstream 207169 27797549 ~ 27799115 (+) False AMCG00016699
TU18718 lncRNA upstream 401409 27599810 ~ 27604875 (+) False AMCG00016691
TU18926 lncRNA downstream 88644 28116918 ~ 28117190 (+) True G15224
TU18928 lncRNA downstream 90269 28118543 ~ 28119649 (+) True G15226
TU18958 lncRNA downstream 132391 28160665 ~ 28160887 (+) True G15253
TU18980 lncRNA downstream 197568 28225842 ~ 28230979 (+) True G15270
TU19065 lncRNA downstream 406710 28434984 ~ 28435256 (+) True G15328
AMCG00016707 mRNA upstream 7507 27964578 ~ 27998777 (+) True AMCG00016707
AMCG00016704 mRNA upstream 118072 27881440 ~ 27888212 (+) True AMCG00016704
AMCG00016702 mRNA upstream 128254 27877448 ~ 27878030 (+) False AMCG00016702
AMCG00016703 mRNA upstream 135098 27862189 ~ 27871186 (+) True AMCG00016703
AMCG00016706 mRNA upstream 168512 27836701 ~ 27837772 (+) False AMCG00016706
AMCG00016708 mRNA downstream 11750 28040024 ~ 28051031 (+) True AMCG00016708
AMCG00016711 mRNA downstream 45321 28073595 ~ 28090180 (+) True AMCG00016711
AMCG00016720 mRNA downstream 126488 28154762 ~ 28181038 (+) True AMCG00016720
AMCG00016722 mRNA downstream 252224 28280498 ~ 28286427 (+) True AMCG00016722
AMCG00016721 mRNA downstream 280328 28308602 ~ 28345826 (+) True AMCG00016721
TU18876 other upstream 127587 27872663 ~ 27878697 (+) True AMCG00016702
TU18835 other upstream 174590 27829268 ~ 27831694 (+) True AMCG00016705
TU18724 other upstream 386365 27613105 ~ 27619919 (+) False AMCG00016690
TU18716 other upstream 406692 27588479 ~ 27599592 (+) False AMCG00016691
TU18924 other downstream 76463 28104737 ~ 28105711 (+) True G15223
TU19419 other downstream 2044664 30072938 ~ 30074896 (+) False AMCG00016772
TU19422 other downstream 2052980 30081254 ~ 30083528 (+) False AMCG00016772
TU19434 other downstream 2081325 30109599 ~ 30113284 (+) True AMCG00016770
TU19453 other downstream 2208180 30236454 ~ 30236841 (+) True G15659

Expression Profile