RNA id: AMCG00016712


Basic Information

Item Value
RNA id AMCG00016712
length 7225
RNA type mRNA
GC content 0.49
exon number 12
gene id AMCG00016712
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28130012 ~ 28157200 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGTGATGCATCGCTTTAAGCCTCTCGAATACTTTTTTCAGCAGAACTCAGACGGAAACCGTTTCTGTGAGAAAATGAGAGACTGACAGCGCTTGTGAAACAATAATCATTTGTTTCTTCAGGCTGCCGATCTACGGTTCTCGGTATCCTGGGGCGGCTGCCATTTGCCAGGTAGTTCCTGTCAGGTTTGCTGGCTCGCCTGCTGCTCGTCGGCGGGAGAGACCGCAGCCCCTGGCCGCTCGCTCAGAGCTCATTGCCCGCTTGCGGCTCTGAGAGACACCGGTGACACGGGTCCGGCCTGCGTGTCTGGCCGATGAACCCGAGCGTGAACGGGGGTCCCAAACGggTGTCATGTGAGTGAGAAGTCGGGGAAGGTGCAATGCTTTCAACACAAATGCCTGAAAATGGTCCGGAGCCTAAAGAAGTCAAACAGTGGCTCAAGACCAGGCTGGCCCTGTCTCTCAAGGCCTTGCAGAAGCGCTACGTGACCTCTGACACCGCCGTCACCAGCGACGATGGCGATGCCAACGCCCTGTGCTGCGCTCTGGAGGCCGTGTTCATCCATGGCATCAAGAACAAGCACGTTAGGACGGAGGCCATGGCCAGGGGGAAGAAGGGCCTCCGGGGCCCCCTGCCTCAGCCGGTGTTCTGGGCCCTGCTGAAGACTGTCACTCACCGAGATGTGATCACCGAGCTGGAGCATCTGAGCTTCATCAGCACAGACGTGGGCCGCTGCCGGGCTTGGGTTCGACTGGCTCTCAACGATGGACTGATGGAGTGCTACCTGATGTCCCTGCTGCGCGAGAGCTCACAACTCTCCGAGTATTACCAGTCCACAGCCCTCTTATTTGACTCAGAAGATCGTGAGGTGCTGCTTAGCTACCTCCAGGGCCTGACCTCCCTGTCCTTCGAGCTGTCCTACAAGTCTGCGGTGCTCAACGAATGGACTGTCACTCCGCTGATGTTGGCGGGCCTTGTGCCCAGCTCCGACTCCCTGGAGCTCCCAGCCCCGATAAATCCCGTCGCTAAGCGCAAACAGTCCTGGGATTCCACATCCCAGTCTTCCGGTTCCGACATCATCGAAGTGCAGCACAACTCTGGGCCGGCCGCTCACCAGGCCAGGAACGTGGGCTCCACCAAACTCAATGCCTCCAGTCTCAGCCTGGACACCACTGGCTCTTCCCAGCTCTCCTCCAGCCTCAGCTCAGATAGCCTTCTGCAGGTCAATGGCCAGAAGAGTCCAGACAAGTCCTCCGAGGAGCACTGGCCCAGCGACCTGGATGTACTCCCCACCGAGTCTTCACCAGAGTTAATGACGGACTTCAGTGAAAATGCCCATTCTAGTGACGACTCCGGTCTATCCAGCCAGGCTCCGCTCCCGCTGTCAGAGAGCACGGAATCCAGCGGCTCTGATGGCGAGACACACCACCCAGCGACTCCTCTGGCAGACCCTCCTACCACCGGCCCCTCGGCCCCTGTGCTGCCCCTGACCAGCACAGACATTCCCGGGGAGCAGAGCAAGCCAAGGCAGAAGCCGGTCCCTGATCCACACTCTCCTGCAGCTGAGCCGACTGTTTTGAAGGTCTTCATCCCACAGACGTCTCTCCCCGAACCTGCCTCGTGCCCCTCTGTAGAGGAGCAGCCGCAGGGCGATGCACCAAAGCGCACAGACAGCTGCTTGAGCAGCTGTCTCTCTGTAGATTCCTTACATTCCCCAACAACTGGGCTTCCCAAAAACAGGAGCTGGATATCAGAGGATGACTTTTATAAGCCATGCCAAGAGGAAACCTCCAGACCAGAGGAGGCAGTGTGCTGTGGTGCTGCCCTCGTTAATGGAGATGTCCCGGCTGTGCCTGTACCTGAGCCTGAGCCTGAGCAGCCCCCACCCAGTGTGGTCCATCGTAGACAGACGGGCCTAGTGAACCCATTCCGTGGGCTTCTGAAGCTCGGCAACCTGGAGAGGCGGGGGCCGGTGGGGATCTGGAAGGAGTACTACTGTGAGCTGTCCCCCTACGAATTCCGTCTCTACCTGAACGACGAGGAGCGCACCTGCTGCGAGAACTGCTCCCTGCGGCGCTGTGAGTCTGTGCGCAGCCCCAACAGTGACGGCCGCTTCGAGCTGCACTTCACCGGGAAGAAGCTGTTCCTGCGAGCCCCCTCCCAGGACGAGGCCGAGGACTGGGTGGACCGGCTCTGGGAGGCCATCACTAAGTTACGCCCGGCCCCTCTGGATGAACAGTGGGAGATACTGCAGGCCTCTGACCGGGGCAGACCGGAGAAGCCCACGCCTGCTTCTTCACCCGCCTCCAAGCAGCCCAGCCTAGAGGAGAGCCAGCCGCCCGTGTTGTGCTGGATCCGGGACACCGACCCCGAGCAGGACGCCATCAAAGAGACAGTGCTGTACCACTCCACTGACGGCAGGAGCTGGACGCCCTATGTTTTCTCGCTCTCCCTCGAGGCCCTCAAGGTCTTCCGGGTCCAGCACGGGCAGAAGCTCCCGCACTGCACGCATAGCATTGAGTCCATCAGGGACGTGGTGCCGGACACCTCCCAGGGAAGCCCGGCCTTCTTCAAGGTCCTGACATCCAAGTGCACCCTCCTGCTGCAGGCCGAGTGCGAGAGAGAGGCGCACTCATGGCGAAGGCTGATCCGTGGGGCGCTCAACTCCTACCTGGAGACCACGGAGGATGAGGCCTCGGGAACTGGGGATAGCAGCAACCTCCACCGGCTCATCCAGCACAGCCTCCGGGCCGGCACCACGCTCCTGCCCTACCTCTGCACTGTCCCAATAGAGAGAGGAATGGATGTGCAGAAGTTTAAATGTGCAGGCTGCCGCATACAGATTGGCTTCTCCTTCGGGAAACCCAAGCTGTGTGAATATTCCAGGCAGTATTACTGCGATGGCTGCCACCAGGGAGAGGTTTCTGTTATTCCATCCCTGATCATTCATAACTGGGACCTTGCCGCCAGAGAGGTTTCCCGACCGGCTATGAAGTTTCTCGCTCAGATTGCCCACGAGCCCCTGATCAACATGGAGCGCCTGAATCCTGGTCTCTACAGCCATGTGGATCAGATGATGCAGATCTACAACAGCCGGCAGAAGCTCAGGCTGCTGGGGGATTATCTGAAAACCTGTCGGAGTGGCGCTATAAAAAACATGCAGGCCAAACTCCAACACAGACATTATCTCCTGGAATCGGCACACAAGTACAGTGTGGCGGATCTTCGGCAGATCGCAGAGGGGCAGTATGAGGCCTTTCTGCAGACGATTATCCAGTTTGGTTCCATCCATGTCTACAACTGTGTCCTTTGCACCCAAAGAGGCTTCATCTGCCAGATTTGCAACCACGATGACATAATTTTCCCTTTTGAGTTCAGTACAACGACCAGgtGTCAGGAGTGCAAGACTGTGTTTCACTCCTCTTGCAAGGCGCAGTCTGCTGCCTGCCCTCGCTGCCTGCGGCTGCAGAAGTACCTGGAGAGGGAGCTGCAGGACTAGTGGCAGCCAGGCCTCGGCACCCGGAGTGGCTCTTCTTCAAGCAGCTACCTTGAGAGACCAATGCCAATGAAAGCCTCCAGCAATGCCCCTGGAGATTACACAAGTTATTGTTCCCCCTCCGATTATCTCACCGTGTTACAGCTGTGAACAGTCTCTATAAGGGCCATGCTTGCACAGTGGCTCTGCACGAAACTGTCGGCGGTGGTGGAGCTTTACAGAGCCAGCGTGCTCTGCTGAGGGACCCTGTGGGGGCTTTTGAAATCTGTGTGGCCACAGTGTGTCCTGTCGGGTGAATGAAGTGGGAGGAACATGGGTGAGGAAGAGCTCACCTTTACAACACTacgattgtttttttatatataaatgtccaCTTCCACTTTTTGAAACTTAAATACACTTGTGTGTGGCCAAGCCCCCGGGAAACAACGCTGTAGGAAGAAGCAATTTcgtttttggtttttggttaCTAACACAAGCCCAGCCAGGAGTTCTCCACCTGTTTTGATGAAGACATTGGGttcttagttttttattttaaatgagaatagACACTTGTGGTGATGTTTTGGGGTTCTCAGATTCAACGTTGGTATCTGGTCAGTTTGCTCTTCCTTGCTCTCGAGCTGTGAGCAGCGGGGATCAGCCCGTCTCTCTTCATCGCCTCGGCAGGCTGTGTCGGTCCACCTGGTGTGCGCAGCCCATGCCAAGCCGCAGGGCAACATCGTGCCATCCCATCGCAACTCCTCCAAACATCACTCAGGGTATGAAGGTCGCCTCCCCTTTGATGGATTTAAAGGCCAGTTTTATTTGACCTTCTTCGGTGTGCTGCTTTTAAcctcttttgcttttatttattcttatttccttttcattaaatgtgcaGGGAGGGTCCCCCCTTTCTCAGAAGCACATATTTCCTCTCTTTCAGACAGTCGGCacatgtccttttttttttcaggaatgtttttttcttgttcttgcactgctggaatttatttttgattaccTAATCTTTGCAGACCAGGGAAAAAGTTGTTGTTGGGGGTTGGGGTGGaatatttacaaagaaatgaaagtgtaattgtatagcaaattatatttaagaGGAACGATTAGGGATATGTAGTTTATGTGTATAAGtaagtatctttttttttcatataaaacatttctcctttaattaatttccagcTCTCATTCTGGGCTATTTTCTCTAATGTTAACACTGCAAGCACTCATTTGTGAACTTTGTACAGaagtaagttttatttttcttcctgttttttaaaaatatggcTTACTATATGAGGATAAACATTTAGTTTATGGAAATCAATAGTATCTAATGAATAGTAGGAAAATGAAGTGGGAAGTATATATTAAgagatacatttgtattgcattttgttgtCCACTTACTAATTTTATATGAAGGATTAGGagagattatttaaaaatatacacaaccAAAACATGGAGTAAAAGTGTGTGCGTAACCAAatttttagattatttatttttattgagatttttttttaaatttgctcGTGAATAAGAATGCACTATTATCATAATGATAGATGACTTAAATGAATATCATTATTCTAAATTGGTGCTACAATTACAGCGGTGCCAGATAGTATACATACGTAGACTTATATTTGCACCGTGCAATTATCTTGGAAATTGAGCTGAATCCTTTAAGTCCTGGTTTCACAGGCCCATATTGGCACTAGTCCTGGTCTACTACTAAAATCTTAATTTAGGTGAGTAGAGCTAATCAagctctgtgaaaccagctaTATGAACCATATTCTTGACCATCTGAGTGGGAAAAAATACTCCCGTTCCACTGCAGTATTCCTGAAATGTAATCTTAAGACTGAAACTAGAAACTCCAAGCTCCCTCTGTGTCTGGGGGTGTTATTTCTGAACATTTGATGCTATAGGAtctgtattaattaatataggGGTTATAAGACGGGCGTTTGCTTTGATGGCAATATAAAATGATCATCCAAACCCTTGAAGAAGAGCACTTAAACTCTTGGGTTGTTCACTTTactataaataactttttttctttccataaatTGTGCCTtcatttgactgttttgtttagtgtggcacattttatttattaaatatggcacatttttataatatatatgcatacacacacattgtatattGATTGTATGGATGTTCTGTTGTTCAGCATGTAATGTAGTTGAAATTTCCACTGTCCATTGtgccaaaaagaaaaggaagcatATTGCAATCATGTTTCTGTAATTTTAAGTCACCTACAGTTGTTTATGCACATACATTGTGAATGTATGTGGtggtaaatgttaaaaaataatttagggGTGACACAGTGTGTACTGCATGTGATTTGTCTTGCCTGTAAATCACTTTAATTGAAAGATCAATTCACTGAAGGTGAAAGCCACTTCGCTCGATGCCAGTAAACGCCTGCAGCTGTTCCCACCTGCGTTAGTCATCCTTGTCTAGCACACTCAACACCGAGTATTACTGGGTcttggcaaaataaaataagatgttCTGATACATCGACAGTATGGCACATCCTAATATTTAGACCACTTTCATCCCTGAACTAAAATTGGAGTCTGtagaatatacaaaaaaaaaaaaaatgtaaataataaatacagctaCTGGACTCAAACCAATCCATGCTGGTCAGTCTCAATGCGATGCAGACCTGGGCCTGCAGTACATCAGTCTTGAACCCACCAATCCCAATAAACGTATCGTTGGCTTCACATTCTGGAGGCTTTTGTGCCCACAAAGTAGTGTATCACCATGCTTCCTCCCAAGTTCTCCTTTTTCCTACCGCACCGTCTACACCAAAGCATTACCCAGTTCATAGTGTGCAATTGTATGATTatcaaaaaatgaagaaaaatcacaagcaatctttttttatttttccttgttaCTATCTGAATCGCATCATTACCACATTTTCAGATGGTACGGTGCACTTTTTTCATGGGCTgaatttaagattttaatttattttttattctgatttTTTGGCTGTATTCTTGATGCTTTTATTATAGCCACAAAACTTTGAAGATGTCTATATTCAGTTTGGGTCTCTCTGAACGTCTCCCTTGATTGTATCAGGTGTAGGGGAGGGGGGtgcctttttattgctcttATTAACCTAGTTTGTACCAGATAATCACTTTAATAATGTAAGACTAGTTTTCTTACTTTTAATACAGGGTTATTTCCAGACTCAAGCCACAGCTGTTGTGTAATCTAAATCCTGTTTCCTGAGAGTGTGCACTTTGTCAGTTCCTGTTTGAATACAGTAGGGGGTAGCATTCCATTGTGTCTGTGTAGCAAGAAGGAACATGTCTTCAATCTATGCACAAAATCCAGGGCTGGGTCTCCGATCTtcccctctccccttccctTAGCACTCCACTCGGGCACTGGCATCCCAATCCTTATGGACCAAAAGGAGGCAATCCTCTTTCTCCTGTATGTCCTTTCTAGACATACTGTGGGATTCATGAGCTAGCCACATGCTTTCCATTGGAGTTGAAGGTTGTTGTTGTCCTCCTCCCCCCCCTATCACTGCCTGCATAGTAGGGCAACATTGATAAATTATACCCTGTGGTGTTAAGAGGAGTGGGATAGAGGGATGTGTTTGAGATCCAGCTCGTAGTGAGCTGCACAGCA

Function

GO: NA

KEGG:

id description
K23282 PLEKHM1; pleckstrin homology domain-containing family M member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18931 lncRNA downstream 71991 28003239 ~ 28058063 (-) True G15228
TU18901 lncRNA downstream 141625 27979546 ~ 27988429 (-) True G15206
TU18900 lncRNA downstream 141625 27982888 ~ 27988429 (-) False G15206
TU18906 lncRNA downstream 163198 27964543 ~ 27966856 (-) True G15207
TU18895 lncRNA downstream 243494 27885962 ~ 27886560 (-) False G15201
TU18959 lncRNA upstream 14671 28160687 ~ 28160940 (-) True G15254
TU19002 lncRNA upstream 138346 28284362 ~ 28286445 (-) True G15291
TU19067 lncRNA upstream 305382 28451398 ~ 28451632 (-) True G15330
TU19115 lncRNA upstream 535822 28681838 ~ 28682338 (-) True G15364
TU19116 lncRNA upstream 549682 28695698 ~ 28695920 (-) True G15365
AMCG00016713 mRNA downstream 22118 28092244 ~ 28107936 (-) True AMCG00016713
AMCG00016709 mRNA downstream 132380 27991647 ~ 27997674 (-) True AMCG00016709
AMCG00016701 mRNA downstream 287386 27840195 ~ 27842668 (-) True AMCG00016701
AMCG00016700 mRNA downstream 320942 27806349 ~ 27809112 (-) True AMCG00016700
AMCG00016695 mRNA downstream 391625 27732315 ~ 27738429 (-) True AMCG00016695
AMCG00016714 mRNA upstream 1811 28147827 ~ 28148678 (-) True AMCG00016714
AMCG00016719 mRNA upstream 50411 28196427 ~ 28209980 (-) True AMCG00016719
AMCG00016716 mRNA upstream 65828 28211844 ~ 28214306 (-) True AMCG00016716
AMCG00016715 mRNA upstream 69664 28215680 ~ 28221102 (-) True AMCG00016715
AMCG00016717 mRNA upstream 83759 28229775 ~ 28253184 (-) True AMCG00016717
TU18749 other downstream 701403 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 726132 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 759915 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 850720 27268820 ~ 27279334 (-) True AMCG00016671
TU18448 other downstream 1558413 26568669 ~ 26571641 (-) False G14843
TU19143 other upstream 635456 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 2055443 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 2380276 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 4277042 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 4351491 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile