RNA id: AMCG00016713


Basic Information

Item Value
RNA id AMCG00016713
length 3320
RNA type mRNA
GC content 0.51
exon number 17
gene id AMCG00016713
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28092244 ~ 28107936 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTCTCCCAGTGGCGTCTCAGGTGGAGAGTGAGAACCCCAGCTCTGCAGTGTACGTCAACGTAGCTGAGCTGAAGAAAGGCAGGGCGGAGCCCGACACCACCCCAGCCCCGCCCCCTGCCCGTCGAACCCTGTCCACCAGCTCTGTGGATTGGGAGGTGCACGTTGACAAGGATAGCGGCCAGGAGTTCTTCTACAACACGCTCACAGGACAGACCACCTGGGAGAGTCCCTTTGAGGACCAAGAGGCGACTCTGGAGGAGCTGCCATCCccatctccctccccctccccttccccctctcccgCCGCCATCGTCCCCACTCTTCCCGCCCCCTTCGAGCTGGGCTCTGACTGGGAGCAGCACCTGGACGAGGCCAGCGGCCGTTACTACTTCTACAACTCTGTCACTGGAGACACGTCCTGGGAGCCCCCCGAGCTGCACTCCCCTTCCGAGACAGATATGGAGCCAGAGAACAACAATCGAGACCATGGGCCGCCCCCCCTGCCTGAGGAGGACTACCCTTCAGAAGTGGAAGCTTCCCCTGTGATGCTTCAAAAAGACTTCAGCTACGCCCCAATCAAAAAGGCCATCATGCCCAGGGTGAATATCGACTCGGAGGCACCAGCAGGCTGGTCGAGCTCCGTGGACTCTGAGGGGAACACGCTGTTCACCTGTGACCACTCCCAGGAACAGTGGATCCAGTCGGTGGATGAGCACGGACAGACTTACTACTACACAGCTGACGGGTCCAAATCCCAGTGGAATTTGCCTGAGCTACCAGTAGCTTTTGGCCAACCTAAAGTAGGGAACGGGTTTGACATGGCAGGAGTGCCGGTGATAAAGAACTGGAGACACACGATGGTGCCGTCCCAATTCGGCCTGGGACAGGAGGACGCGACTCAGAAGTTTTTCCCATCTCATCGGCGGAACGTTTCCGACTTCGGGAGTGACATCTCGAGCTCGCCCGAACTGCAGCACCAGACACACACTCTGGAAAAGGCGGGAATTCTCAACAAAACAAAGGTGCTGGAGAATGGGAAAAGACTCAGGAAAAACTGGGCCCAGTCGTGGACGGTTCTGCACGGTGGAATCCTGACGTTTTACAAAGATCCCAAGTCCCAGCAGGCAACAGCGAGTAAGACCAATCAGATCGTGCCCGAGTACACGGTGGAGCTGCGGGGAGCATCGATTGCCAAGGCCATGAAAGATAAATCCAGCAAGAAGAATGTGCTTGAGTTGAAGACACGGCACGGCTCGGAGTACCTGGTGCAATACGACACCGAGAGTATCATCACTGACTGGTTCAAAGTGATCAATGACACCATTCGACAGCTGGACAGGGAACACCACTCGGAAGGGGAGGAGAGCGAAGGAGGTGGCAGCGAGAAATCCCCGGGGCCTGGAGACAAGGAGGACAAGAAGAGGGCCTCCACGAGGCAAAGCGTCTCCGGATCTTCCACCAGTGAGGCCGATCAAAAGAAGGTGCGAACGAAGCTCCGGAAGTTCCTGCAGCGCCGACCCACCCTACAGTCCGTGAAGGAGAAGGGCTACATCCGAGATCAAGTGTTTGGGTGTTACCTGCAGACTCTGTGTGAGAGGGAGGGCACTACGGTTCCCAGCTTTGTTGAGAAGTGCATTCAGGCAGTGGAAAAAAGAGGTCTGGACATTGACGGGCTGTACCGAGTGAGTGGGAACTTGGCGGTTATTCAGAAGCTGCGATTCAAAGTGGATCACGAGGAGAACCTGGACCTGGAGGACGGGCAGTGGGAGGATATCCACGTCATCACCGGAGCCCTGAAGCTCTTCTTCCGGGAGCTGCCCGAGCCCCTCTTCCCCTACAATGTCTTCAACAACTTCATCGCTGGCATCAAAATTAGTGACTATAATCAGAAGGTGACATACATGAGGGATTTGGTGAGGTCTCTGCCGCCACCAAACCACGACACCATGAAGCTGCTGTTCAGCCACTTGCGCAGGGTGATAGATTACGGCGAGGAGAACAGGATGTCGGTGCAGAGTGTGGCGATCGTGTTCGGACCCACGCTGCTCAAGCCCGAGACAGAGTCGGCCAACATCACCATGCACATGGTCTTCCAGAACCAGATTGTGGAACACATCCTGAACGAGTACGAGCGCATCTTCGGCCGTGGCTGAGCCTCTGGTTAGACGGGGATGTGGACAGGACTGTAGGCGCAGGAACGCCAGGCGACATGTGCTTTGGGTCGGCGAGGGGTGTAGATTTGGTGCTAAGTAGTTTGCcggtgatttattttattacttttttaaagtcCCTATTCCTGTGTACAAAGCGTTAAGGCATCATGTGACCTGTGTGTGCACCACCGCTCCAGTGACCCTCGAGCGCCCCGGCCTCCTGCACAGGATTCCAAAGCAGGGGGTTCAAATGGGACCAGTGGCTGAGCTGCTGTATTTCCTCAGAGACATCCCTAGGGTGAAGAGGCAGCTGTCAAGATTGGATCAATGTTCCTATGCAGGGGATTGATTATCTTCCTTAGGCTTGGACTTGCACCCATTGcagtggggggaaaataaataatacaaaaaaaactacaattcccaagGACTGACCTGCCACTCCTGCCTGTGTAAGTCTTGGTATCAGATCAGGCCCGTTCCCATTCTCACACTTGCTGCTACCTTTCCAACCGACAAGTTATCTTCTGCAGTGGCCTTAAGGgactatttaaacaaataagttcAGATTTGTTACTGACCAGCAGctaaacaaaagcaatactGTCACAAATTGTACCTACAAGCTTATGTTACTTTGGGGAATGCACTTGCTATTAAACAGTGCCTTTTATATGGAAGAGCTAAAAAGAAATGCTACTGCCGTGGTCTTACTGTGAAAGGGACATAACTCGCTTCTATAACAATtgtacagtttattaaaatatataaatatatatatatataattattataagtTGCACCATATaggatattttgtatttggcagaaaaaaatattggtagattgttaaatatgtatctgtggctttgtaaaatattttcagaactttaaatatacatatataaagtgAGGCAGATTTGAGCTGtacagtttatttcattttgcattaatATAACAGAACATGGTGACgtcaaaatgtgttgtttgcAAAAGGATGACGTGTGGGTGGAGCCTGTTGTAAATACAGAGGGagatttaaatgtctttaacaAATGACTCAAAAAGatgcattttgtcttttaataaaataatttgtacttaAATGGTAGTCTTCTGAGGTGTACTTTTGGTTTGTTCATGTGCTTTAGGGTTTATTGATA

Function

GO: NA

KEGG:

id description
K20636 ARHGAP12_27; Rho GTPase-activating protein 12/27

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18931 lncRNA downstream 34181 28003239 ~ 28058063 (-) True G15228
TU18901 lncRNA downstream 103815 27979546 ~ 27988429 (-) True G15206
TU18900 lncRNA downstream 103815 27982888 ~ 27988429 (-) False G15206
TU18906 lncRNA downstream 125388 27964543 ~ 27966856 (-) True G15207
TU18893 lncRNA downstream 205684 27885086 ~ 27886560 (-) True G15201
TU18956 lncRNA upstream 22076 28130012 ~ 28157200 (-) False AMCG00016712
TU18959 lncRNA upstream 52751 28160687 ~ 28160940 (-) True G15254
TU19002 lncRNA upstream 176426 28284362 ~ 28286445 (-) True G15291
TU19067 lncRNA upstream 343462 28451398 ~ 28451632 (-) True G15330
TU19115 lncRNA upstream 573902 28681838 ~ 28682338 (-) True G15364
AMCG00016709 mRNA downstream 94570 27991647 ~ 27997674 (-) True AMCG00016709
AMCG00016701 mRNA downstream 249576 27840195 ~ 27842668 (-) True AMCG00016701
AMCG00016700 mRNA downstream 283132 27806349 ~ 27809112 (-) True AMCG00016700
AMCG00016695 mRNA downstream 353815 27732315 ~ 27738429 (-) True AMCG00016695
AMCG00016694 mRNA downstream 384715 27701012 ~ 27707529 (-) True AMCG00016694
AMCG00016712 mRNA upstream 22118 28130054 ~ 28146016 (-) True AMCG00016712
AMCG00016714 mRNA upstream 39891 28147827 ~ 28148678 (-) True AMCG00016714
AMCG00016719 mRNA upstream 88491 28196427 ~ 28209980 (-) True AMCG00016719
AMCG00016716 mRNA upstream 103908 28211844 ~ 28214306 (-) True AMCG00016716
AMCG00016715 mRNA upstream 107744 28215680 ~ 28221102 (-) True AMCG00016715
TU18749 other downstream 663593 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 688322 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 722105 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 812910 27268820 ~ 27279334 (-) True AMCG00016671
TU18448 other downstream 1520603 26568669 ~ 26571641 (-) False G14843
TU19143 other upstream 673536 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 2093523 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 2418356 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 4315122 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 4389571 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00049908 True 4957 mRNA 0.42 19 NC_007114.7 22381955 ~ 22422169 (+)